Gm38541 Pseudogene Detail

Summary

• Symbol
  Gm38541
• Name
  predicted gene, 38541

• Feature Type
  pseudogene
• IDs
  MGI:5621426
  NCBI Gene: 102641202
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:46802466-46803282 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621426	pseudogene	Chr15:46802330-46803282 (+)
129S1/SvImJ	ENSMUSG00200019684	pseudogene	Chr15:43734835-43735646 (+)
A/J	ENSMUSG00195005826	pseudogene	Chr15:43740193-43741004 (+)
AKR/J	ENSMUSG00220018358	pseudogene	Chr15:43705540-43706356 (+)
BALB/cJ	ENSMUSG00180005003	pseudogene	Chr15:43722268-43723079 (+)
C3H/HeJ	ENSMUSG00175020952	pseudogene	Chr15:43958363-43959179 (+)
C57BL/6NJ	ENSMUSG00215003304	pseudogene	Chr15:43744035-43744851 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014321	pseudogene	Chr15:43682386-43683202 (+)
CBA/J	ENSMUSG00210026758	pseudogene	Chr15:43839535-43840351 (+)
DBA/2J	ENSMUSG00185013261	pseudogene	Chr15:43805115-43805931 (+)
FVB/NJ	ENSMUSG00205015775	pseudogene	Chr15:43762991-43763807 (+)
JF1/MsJ	ENSUMUG00000024648	pseudogene	Chr15:43621178-43621994 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008591	pseudogene	Chr15:43794576-43795392 (+)
NZO/HlLtJ	ENSMUSG00225038192	pseudogene	Chr15:47470739-47471555 (+)
PWK/PhJ	ENSLUMG00010012678	pseudogene	Chr15:43826706-43827522 (+)
SPRET/EiJ	ENSMSPG00010007192	pseudogene	Chr15:44738813-44739629 (+)
WSB/EiJ	ENSIUOG00005021610	pseudogene	Chr15:43816711-43817521 (+)

Homology

• Gene Tree
  Gm38541
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38541
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115495 (Evidence)
• NCBI Gene
  102641202

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115495	Ensembl Gene Model | MGI Sequence Detail	817	C57BL/6J
transcript	ENSMUST00000228621	Ensembl | MGI Sequence Detail	817	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17