Gm38537 Gene Detail

Summary

• Symbol
  Gm38537
• Name
  predicted gene, 38537

• Feature Type
  lncRNA gene
• IDs
  MGI:5621422
  NCBI Gene: 102641152
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52374596-52400690 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  917 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621422	lncRNA gene	Chr3:52371787-52400690 (+)
129S1/SvImJ	ENSMUSG00200000432	lncRNA gene	Chr3:49203546-49227435 (+)
A/J	ENSMUSG00195000790	lncRNA gene	Chr3:49163920-49187824 (+)
AKR/J	ENSMUSG00220015854	lncRNA gene	Chr3:49220484-49244389 (+)
BALB/cJ	ENSMUSG00180000627	lncRNA gene	Chr3:49244740-49268612 (+)
C3H/HeJ	ENSMUSG00175002220	lncRNA gene	Chr3:49077653-49101552 (+)
C57BL/6NJ	ENSMUSG00215000593	lncRNA gene	Chr3:49511391-49535281 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009910	lncRNA gene	Chr3:48875020-48898697 (+)
CBA/J	ENSMUSG00210000623	lncRNA gene	Chr3:49189822-49213709 (+)
DBA/2J	ENSMUSG00185000297	lncRNA gene	Chr3:49426902-49450792 (+)
FVB/NJ	ENSMUSG00205009882	lncRNA gene	Chr3:48407523-48431423 (+)
JF1/MsJ	ENSUMUG00000028295	lncRNA gene	Chr3:48833983-48857917 (+)
LP/J	ENSMUSG00230004967	lncRNA gene	Chr3:51376578-51400219 (+)
NOD/ShiLtJ	ENSMUSG00190000750	lncRNA gene	Chr3:49554106-49577995 (+)
NZO/HlLtJ	ENSMUSG00225018014	lncRNA gene	Chr3:53992639-54016543 (+)
PWK/PhJ	ENSLUMG00010010474	lncRNA gene	Chr3:49001365-49025494 (+)
SPRET/EiJ	ENSMSPG00010007240	lncRNA gene	Chr3:49666148-49689747 (+)
WSB/EiJ	ENSIUOG00005000443	lncRNA gene	Chr3:49340887-49364773 (+)

Homology

• Gene Tree
  Gm38537
  

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  7

• Ensembl
  ENSMUSG00000120422 (Evidence)
• NCBI Gene
  102641152

Representative Sequences			Length	Strain/Species
genomic	102641152	NCBI Gene Model | MGI Sequence Detail	26095	C57BL/6J
transcript	XR_867261	RefSeq | MGI Sequence Detail	3073	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38537:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29095	Chr3:52375976-52375989 (+)	1,387 bp