Gm38534 Gene Detail

Summary

• Symbol
  Gm38534
• Name
  predicted gene, 38534
• Synonyms
  Gm44783

• Feature Type
  lncRNA gene
• IDs
  MGI:5621419
  NCBI Gene: 102641105
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:88121764-88150157 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621419	lncRNA gene	Chr11:88104796-88168662 (+)
129S1/SvImJ	ENSMUSG00200020798	lncRNA gene	Chr11:85280656-85284305 (+)
A/J	ENSMUSG00195009727	lncRNA gene	Chr11:85135569-85139218 (+)
AKR/J	ENSMUSG00220012310	lncRNA gene	Chr11:85335276-85338925 (+)
BALB/cJ	ENSMUSG00180011746	lncRNA gene	Chr11:85341827-85345443 (+)
C3H/HeJ	ENSMUSG00175033951	lncRNA gene	Chr11:85282134-85285783 (+)
C57BL/6NJ	ENSMUSG00215032647	lncRNA gene	Chr11:84920146-84923770 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004788	lincRNA gene	Chr11:83479174-83482978 (+)
CAST/EiJ	ENSTCUG00005017120	lncRNA gene	Chr11:84836952-84840585 (+)
CBA/J	ENSMUSG00210042128	lncRNA gene	Chr11:85099674-85103323 (+)
DBA/2J	ENSMUSG00185020524	lncRNA gene	Chr11:85416411-85420060 (+)
FVB/NJ	ENSMUSG00205021851	lncRNA gene	Chr11:85295312-85298959 (+)
JF1/MsJ	ENSUMUG00000030855	lncRNA gene	Chr11:85744795-85748428 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020258	lncRNA gene	Chr11:85447645-85451294 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035889	lncRNA gene	Chr11:85294215-85297855 (+)
SPRET/EiJ	ENSMSPG00010029100	lncRNA gene	Chr11:85693302-85697042 (+)
WSB/EiJ	ENSIUOG00005008559	lncRNA gene	Chr11:85261328-85264945 (+)

Homology

• Gene Tree
  Gm38534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38534
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  4

• Ensembl
  ENSMUSG00000108634 (Evidence)
• NCBI Gene
  102641105

Representative Sequences			Length	Strain/Species
genomic	102641105	NCBI Gene Model | MGI Sequence Detail	28394	C57BL/6J
transcript	XR_004937234	RefSeq | MGI Sequence Detail	3073	C57BL/6J

Other
Accession IDs

MGI:5753359

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6