Gm38523 Gene Detail

Summary

• Symbol
  Gm38523
• Name
  predicted gene, 38523

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5621408
  NCBI Gene: 102639870
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:111787439-111791040 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621408	protein coding gene	Chr8:111784878-111791791 (-)
129S1/SvImJ	ENSMUSG00200015032	pseudogene	Chr8:106091716-106095319 (-)
A/J	ENSMUSG00195020884	pseudogene	Chr8:106404328-106407929 (-)
AKR/J	ENSMUSG00220015245	pseudogene	Chr8:106546759-106550360 (-)
BALB/cJ	ENSMUSG00180026284	pseudogene	Chr8:106409451-106413042 (-)
C3H/HeJ	ENSMUSG00175025617	pseudogene	Chr8:106466649-106470249 (-)
C57BL/6NJ	ENSMUSG00215037253	pseudogene	Chr8:106069602-106073203 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035526	pseudogene	Chr8:105820660-105824275 (-)
CBA/J	ENSMUSG00210038186	pseudogene	Chr8:106393786-106397385 (-)
DBA/2J	ENSMUSG00185018508	pseudogene	Chr8:112502897-112506497 (-)
FVB/NJ	ENSMUSG00205026851	pseudogene	Chr8:105406260-105409862 (-)
JF1/MsJ	ENSUMUG00000020564	pseudogene	Chr8:114836178-114839780 (-)
LP/J	ENSMUSG00230036762	pseudogene	Chr8:116182687-116186289 (-)
NOD/ShiLtJ	ENSMUSG00190028004	pseudogene	Chr8:106544777-106548379 (-)
NZO/HlLtJ	ENSMUSG00225023429	pseudogene	Chr8:119533369-119536970 (-)
PWK/PhJ	ENSLUMG00010028704	pseudogene	Chr8:106277043-106280605 (-)
SPRET/EiJ	ENSMSPG00010041885	pseudogene	Chr8:108396318-108399884 (-)
WSB/EiJ	ENSIUOG00005032799	pseudogene	Chr8:107230220-107233823 (-)

Homology

• Gene Tree
  Gm38523
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  14

• Ensembl
  ENSMUSG00000118613 (Evidence)
• NCBI Gene
  102639870

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118613	Ensembl Gene Model | MGI Sequence Detail	3602	C57BL/6J
transcript	ENSMUST00000214924	Ensembl | MGI Sequence Detail	336	Not Applicable
polypeptide	XP_011246872	RefSeq | MGI Sequence Detail	157	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38523:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82899	Chr8:111788446-111788454 (-)	2,590 bp
Tssr82898	Chr8:111788399-111788405 (-)	2,638 bp