Gm38509 Gene Detail

Summary

• Symbol
  Gm38509
• Name
  predicted gene, 38509

• Feature Type
  lncRNA gene
• IDs
  MGI:5621394
  NCBI Gene: 102638436
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:34826224-34836495 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  452 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621394	lncRNA gene	Chr3:34826089-34836495 (+)
129S1/SvImJ	ENSMUSG00200006130	lncRNA gene	Chr3:31558629-31568888 (+)
A/J	ENSMUSG00195001480	lncRNA gene	Chr3:31558013-31568269 (+)
AKR/J	ENSMUSG00220000898	lncRNA gene	Chr3:31595908-31606185 (+)
BALB/cJ	ENSMUSG00180002783	lncRNA gene	Chr3:31678222-31688497 (+)
C3H/HeJ	ENSMUSG00175003586	lncRNA gene	Chr3:31588229-31598492 (+)
C57BL/6NJ	ENSMUSG00215001654	lncRNA gene	Chr3:31952254-31962528 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005598	lincRNA gene	Chr3:29692839-29704215 (+)
CAST/EiJ	ENSTCUG00005025542	lncRNA gene	Chr3:31443636-31454233 (+)
CBA/J	ENSMUSG00210001776	lncRNA gene	Chr3:31636452-31646690 (+)
DBA/2J	ENSMUSG00185001594	lncRNA gene	Chr3:31881468-31891732 (+)
FVB/NJ	ENSMUSG00205009049	lncRNA gene	Chr3:31060943-31071239 (+)
JF1/MsJ	ENSUMUG00000005286	lncRNA gene	Chr3:31325904-31336239 (+)
LP/J	ENSMUSG00230024185	lncRNA gene	Chr3:33801654-33811921 (+)
NOD/ShiLtJ	ENSMUSG00190001444	lncRNA gene	Chr3:31868277-31878535 (+)
NZO/HlLtJ	ENSMUSG00225007113	lncRNA gene	Chr3:36419670-36429929 (+)
PWK/PhJ	ENSLUMG00010037036	lncRNA gene	Chr3:31385925-31396680 (+)
SPRET/EiJ	ENSMSPG00010000664	lncRNA gene	Chr3:31761506-31771378 (+)
WSB/EiJ	ENSIUOG00005013794	lncRNA gene	Chr3:31882279-31892519 (+)

Homology

• Gene Tree
  Gm38509
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000106519 (Evidence)
• NCBI Gene
  102638436

Representative Sequences			Length	Strain/Species
genomic	102638436	NCBI Gene Model | MGI Sequence Detail	10272	C57BL/6J
transcript	NR_110488	RefSeq | MGI Sequence Detail	1172	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:204277 Sauvageau M, et al., Multiple knockout mouse models reveal lincRNAs are required for life and brain development. Elife. 2013;2(0):e01749