Gm38455 Gene Detail

Summary

• Symbol
  Gm38455
• Name
  predicted gene, 38455

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5621340
  NCBI Gene: 100417166, 102633833
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:132535622-132540543 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 64.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  295 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621340	lncRNA gene	Chr2:132535622-132540610 (-)
129S1/SvImJ	ENSMUSG00200048919	lncRNA gene	Chr2:129587664-129591733 (-)
A/J	ENSMUSG00195031282	lncRNA gene	Chr2:129614385-129618476 (-)
AKR/J	ENSMUSG00220046268	lncRNA gene	Chr2:129386636-129390721 (-)
BALB/cJ	ENSMUSG00180049009	lncRNA gene	Chr2:129432926-129437017 (-)
C3H/HeJ	ENSMUSG00175047009	lncRNA gene	Chr2:129975305-129979398 (-)
C57BL/6NJ	ENSMUSG00215037104	lncRNA gene	Chr2:129462315-129466406 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003262	antisense lncRNA gene	Chr2:125479824-125482941 (-)
CAST/EiJ	ENSTCUG00005040112	lncRNA gene	Chr2:128743983-128748164 (-)
CBA/J	ENSMUSG00210035691	lncRNA gene	Chr2:129831762-129835855 (-)
DBA/2J	ENSMUSG00185035611	lncRNA gene	Chr2:129474167-129478258 (-)
FVB/NJ	ENSMUSG00205044703	lncRNA gene	Chr2:128648375-128652468 (-)
JF1/MsJ	ENSUMUG00000031379	lncRNA gene	Chr2:129280403-129284523 (-)
LP/J	ENSMUSG00230040126	lncRNA gene	Chr2:131224824-131228917 (-)
NOD/ShiLtJ	ENSMUSG00190015666	lncRNA gene	Chr2:129555401-129559492 (-)
NZO/HlLtJ	ENSMUSG00225027917	lncRNA gene	Chr2:139133297-139137388 (-)
PWK/PhJ	ENSLUMG00010042810	lncRNA gene	Chr2:129288584-129292718 (-)
SPRET/EiJ	ENSMSPG00010033258	lncRNA gene	Chr2:131658929-131663045 (-)
WSB/EiJ	ENSIUOG00005045305	lncRNA gene	Chr2:129395872-129399967 (-)

Homology

• Gene Tree
  Gm38455
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38455
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000084839 (Evidence)
• NCBI Gene
  100417166, 102633833

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084839	Ensembl Gene Model | MGI Sequence Detail	4922	C57BL/6J
transcript	ENSMUST00000147868	Ensembl | MGI Sequence Detail	1300	Not Applicable

Other
Accession IDs

MGI:3651729

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm38455:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26482	Chr2:132540422-132540446 (-)	109 bp