Gm44504 Gene Detail

Summary

• Symbol
  Gm44504
• Name
  predicted readthrough transcript (NMD candidate), 44504
• Synonyms
  SlcUbl4a

• Feature Type
  protein coding gene
• IDs
  MGI:5621304
  NCBI Gene: 100169864
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:73411053-73416955 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621304	protein coding gene	ChrX:73411053-73416955 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  UBL4A, ubiquitin like 4A

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  UBL4A, ubiquitin like 4A
  
• Synonyms
  DX254E, DXS254E, GDX, GET5, MDY2, TMA24, UBL4
• Links
  HGNC:12505

  NCBI Gene ID: 8266

  UniProt: P11441

  
  
• Chr Location
  Xq28; chrX:154483717-154486615 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gm44504 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: UBL4A

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  5
• UniProt
  3

• NCBI Gene
  100169864

Representative Sequences			Length	Strain/Species
genomic	100169864	NCBI Gene Model | MGI Sequence Detail	5903	C57BL/6J
transcript	NM_001278271	RefSeq | MGI Sequence Detail	1187	ZRU/MplStud
polypeptide	NP_001265200	RefSeq | MGI Sequence Detail	157	ZRU/MplStud

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR019954 Ubiquitin conserved site
  IPR019956 Ubiquitin domain
  IPR000626 Ubiquitin-like domain
  IPR029071 Ubiquitin-like domain superfamily
  IPR047154 Ubiquitin-like protein 4A-like
  IPR044724 UBL4A-like, ubiquitin-like domain
  IPR041421 Ubl4, C-terminal TUGS domain

References

• Summaries
  All 6
• Earliest
  J:10601 Filippi M, et al., Linkage and sequence conservation of the X-linked genes DXS253E (P3) and DXS254E (GdX) in mouse and man. Genomics. 1990 Jul;7(3):453-7
• Latest
  J:136286 Kunarso G, et al., Detailed characterization of the mouse embryonic stem cell transcriptome reveals novel genes and intergenic splicing associated with pluripotency. BMC Genomics. 2008;9:155

TSS for Gm44504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163637	ChrX:73416866-73416915 (-)	64 bp
Tssr163636	ChrX:73416841-73416855 (-)	107 bp