Gm38416 Gene Detail

Summary

• Symbol
  Gm38416
• Name
  predicted gene, 38416
• Synonyms
  Gm45526

• Feature Type
  lncRNA gene
• IDs
  MGI:5621301
  NCBI Gene: 330850
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:118408361-118419937 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  417 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621301	lncRNA gene	Chr8:118408361-118419937 (+)
129S1/SvImJ	ENSMUSG00200043261	lncRNA gene	Chr8:112745986-112757578 (+)
A/J	ENSMUSG00195026989	lncRNA gene	Chr8:113030695-113042283 (+)
AKR/J	ENSMUSG00220044465	lncRNA gene	Chr8:113221148-113232730 (+)
BALB/cJ	ENSMUSG00180030505	lncRNA gene	Chr8:113076631-113088214 (+)
C3H/HeJ	ENSMUSG00175033239	lncRNA gene	Chr8:113133250-113144836 (+)
C57BL/6NJ	ENSMUSG00215034933	lncRNA gene	Chr8:112706958-112718542 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034734	lncRNA gene	Chr8:112447756-112459436 (+)
CBA/J	ENSMUSG00210036815	lncRNA gene	Chr8:113060631-113072218 (+)
DBA/2J	ENSMUSG00185018917	lncRNA gene	Chr8:119159272-119170854 (+)
FVB/NJ	ENSMUSG00205025087	lncRNA gene	Chr8:112042368-112053998 (+)
JF1/MsJ	ENSUMUG00000035817	lncRNA gene	Chr8:121465689-121477277 (+)
LP/J	ENSMUSG00230031450	lncRNA gene	Chr8:122799614-122811198 (+)
NOD/ShiLtJ	ENSMUSG00190022112	lncRNA gene	Chr8:113176659-113188241 (+)
NZO/HlLtJ	ENSMUSG00225043414	lncRNA gene	Chr8:126165409-126176993 (+)
PWK/PhJ	ENSLUMG00010041041	lncRNA gene	Chr8:112885788-112897292 (+)
SPRET/EiJ	ENSMSPG00010042200	lncRNA gene	Chr8:115083093-115094707 (+)
WSB/EiJ	ENSIUOG00005032259	lncRNA gene	Chr8:113926081-113937678 (+)

Homology

• Gene Tree
  Gm38416
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000110151 (Evidence)
• NCBI Gene
  330850

Representative Sequences			Length	Strain/Species
genomic	330850	NCBI Gene Model | MGI Sequence Detail	11577	C57BL/6J
transcript	NR_131057	RefSeq | MGI Sequence Detail	3565	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGI:5791362

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;