Gm38412 Gene Detail

Summary

• Symbol
  Gm38412
• Name
  predicted gene, 38412
• Synonyms
  Gm43257

• Feature Type
  lncRNA gene
• IDs
  MGI:5621297
  NCBI Gene: 329730
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:104318292-104324851 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621297	lncRNA gene	Chr3:104316477-104324851 (+)
129S1/SvImJ	ENSMUSG00200045415	lncRNA gene	Chr3:100929895-100938304 (+)
A/J	ENSMUSG00195025437	lncRNA gene	Chr3:101352051-101362312 (+)
AKR/J	ENSMUSG00220042393	lncRNA gene	Chr3:99707954-99716365 (+)
BALB/cJ	ENSMUSG00180020135	lncRNA gene	Chr3:101276185-101284611 (+)
C3H/HeJ	ENSMUSG00175030406	lncRNA gene	Chr3:100834338-100842709 (+)
C57BL/6NJ	ENSMUSG00215033869	lncRNA gene	Chr3:101586613-101594987 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003420	antisense lncRNA gene	Chr3:98477802-98486221 (+)
CAST/EiJ	ENSTCUG00005021509	lncRNA gene	Chr3:101559365-101567738 (+)
CBA/J	ENSMUSG00210009044	lncRNA gene	Chr3:101456379-101464750 (+)
DBA/2J	ENSMUSG00185022388	lncRNA gene	Chr3:101922769-101931143 (+)
FVB/NJ	ENSMUSG00205032831	lncRNA gene	Chr3:100515457-100523868 (+)
JF1/MsJ	ENSUMUG00000052779	lncRNA gene	Chr3:100675235-100683581 (+)
LP/J	ENSMUSG00230020667	lncRNA gene	Chr3:103858186-103866597 (+)
NOD/ShiLtJ	ENSMUSG00190036697	lncRNA gene	Chr3:102128147-102136573 (+)
NZO/HlLtJ	ENSMUSG00225020256	lncRNA gene	Chr3:106329871-106338295 (+)
PWK/PhJ	ENSLUMG00010029869	lncRNA gene	Chr3:100758816-100767207 (+)
SPRET/EiJ	ENSMSPG00010047265	lncRNA gene	Chr3:100944041-100952423 (+)
WSB/EiJ	ENSIUOG00005004571	lncRNA gene	Chr3:101479010-101487407 (+)

Homology

• Gene Tree
  Gm38412
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38412
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000104768 (Evidence)
• NCBI Gene
  329730

Representative Sequences			Length	Strain/Species
genomic	329730	NCBI Gene Model | MGI Sequence Detail	6560	C57BL/6J
transcript	NR_177245	RefSeq | MGI Sequence Detail	2080	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663394

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;