Gm38411 Gene Detail

Summary

• Symbol
  Gm38411
• Name
  predicted gene, 38411
• Synonyms
  Gm43306

• Feature Type
  lncRNA gene
• IDs
  MGI:5621296
  NCBI Gene: 329711
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:94272842-94278330 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621296	lncRNA gene	Chr3:94272842-94284601 (-)
129S1/SvImJ	ENSMUSG00200040042	lncRNA gene	Chr3:90939170-90947828 (-)
A/J	ENSMUSG00195050203	lncRNA gene	Chr3:91266477-91275135 (-)
AKR/J	ENSMUSG00220052061	lncRNA gene	Chr3:89653545-89662205 (-)
BALB/cJ	ENSMUSG00180044288	lncRNA gene	Chr3:91248272-91256940 (-)
C3H/HeJ	ENSMUSG00175029424	lncRNA gene	Chr3:90910216-90918874 (-)
C57BL/6NJ	ENSMUSG00215036012	lncRNA gene	Chr3:91619944-91628613 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003397	antisense lncRNA gene	Chr3:88540925-88549131 (-)
CAST/EiJ	ENSTCUG00005049439	lncRNA gene	Chr3:91456590-91465244 (-)
CBA/J	ENSMUSG00210051668	lncRNA gene	Chr3:91447705-91456363 (-)
DBA/2J	ENSMUSG00185045182	lncRNA gene	Chr3:91763727-91772383 (-)
FVB/NJ	ENSMUSG00205050358	lncRNA gene	Chr3:90618385-90627043 (-)
JF1/MsJ	ENSUMUG00000053915	lncRNA gene	Chr3:90754778-90763454 (-)
LP/J	ENSMUSG00230045240	lncRNA gene	Chr3:93802714-93811372 (-)
NOD/ShiLtJ	ENSMUSG00190049159	lncRNA gene	Chr3:91922098-91930758 (-)
NZO/HlLtJ	ENSMUSG00225012409	lncRNA gene	Chr3:96209952-96218621 (-)
PWK/PhJ	ENSLUMG00010053101	lncRNA gene	Chr3:90740910-90749578 (-)
SPRET/EiJ	ENSMSPG00010047853	lncRNA gene	Chr3:91054737-91062786 (-)
WSB/EiJ	ENSIUOG00005032877	lncRNA gene	Chr3:91379643-91388303 (-)

Homology

• Gene Tree
  Gm38411
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000104669 (Evidence)
• NCBI Gene
  329711

Representative Sequences			Length	Strain/Species
genomic	329711	NCBI Gene Model | MGI Sequence Detail	5489	C57BL/6J
transcript	AK040387	GenBank | ENA | DDBJ | MGI Sequence Detail	943	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5663443

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:369928 Rodrigues PF, et al., Rorgammat-positive dendritic cells are required for the induction of peripheral regulatory T cells in response to oral antigens. Cell. 2025 May 15;188(10):2720-2737.e22

TSS for Gm38411:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34377	Chr3:94276940-94276944 (-)	1,388 bp