Gm38407 Gene Detail

Summary

• Symbol
  Gm38407
• Name
  predicted gene, 38407

• Feature Type
  lncRNA gene
• IDs
  MGI:5621292
  NCBI Gene: 328061
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:10496388-10581303 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2393 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621292	lncRNA gene	Chr12:10496380-10618014 (+)
129S1/SvImJ	ENSMUSG00200024417	lncRNA gene	Chr12:7484556-7569444 (+)
A/J	ENSMUSG00195016564	lncRNA gene	Chr12:7518382-7603272 (+)
AKR/J	ENSMUSG00220032482	lncRNA gene	Chr12:7548419-7633309 (+)
BALB/cJ	ENSMUSG00180016033	lncRNA gene	Chr12:7510884-7595750 (+)
C3H/HeJ	ENSMUSG00175009873	lncRNA gene	Chr12:7501225-7586116 (+)
C57BL/6NJ	ENSMUSG00215021053	lncRNA gene	Chr12:7337429-7422355 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023468	lncRNA gene	Chr12:7184306-7270414 (+)
CBA/J	ENSMUSG00210013706	lncRNA gene	Chr12:7531854-7616718 (+)
DBA/2J	ENSMUSG00185021904	lncRNA gene	Chr12:7499872-7584743 (+)
FVB/NJ	ENSMUSG00205003343	lncRNA gene	Chr12:7231344-7316231 (+)
JF1/MsJ	ENSUMUG00000041796	lncRNA gene	Chr12:7442678-7527920 (+)
LP/J	ENSMUSG00230013040	lncRNA gene	Chr12:9306579-9391772 (+)
NOD/ShiLtJ	ENSMUSG00190008160	lncRNA gene	Chr12:8751103-8835986 (+)
NZO/HlLtJ	ENSMUSG00225029952	lncRNA gene	Chr12:11408907-11493848 (+)
PWK/PhJ	ENSLUMG00010017019	lncRNA gene	Chr12:7179868-7268147 (+)
SPRET/EiJ	ENSMSPG00010005117	lncRNA gene	Chr12:7929330-8013898 (+)
WSB/EiJ	ENSIUOG00005002382	lncRNA gene	Chr12:7524026-7608953 (+)

Homology

• Gene Tree
  Gm38407
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000112792 (Evidence)
• NCBI Gene
  328061

Representative Sequences			Length	Strain/Species
genomic	328061	NCBI Gene Model | MGI Sequence Detail	84916	C57BL/6J
transcript	NR_110487	RefSeq | MGI Sequence Detail	2391	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  Genomic 1

  cDNA 4

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;