Gm38403 Gene Detail

Summary

• Symbol
  Gm38403
• Name
  predicted gene, 38403

• Feature Type
  lncRNA gene
• IDs
  MGI:5621288
  NCBI Gene: 216377
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:118756286-118763048 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  403 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621288	lncRNA gene	Chr10:118756286-118763048 (-)
129S1/SvImJ	ENSMUSG00200027074	lncRNA gene	Chr10:115106371-115113133 (-)
A/J	ENSMUSG00195021931	lncRNA gene	Chr10:115507041-115513835 (-)
AKR/J	ENSMUSG00220014944	lncRNA gene	Chr10:115138163-115144925 (-)
BALB/cJ	ENSMUSG00180017921	lncRNA gene	Chr10:115519841-115526635 (-)
C3H/HeJ	ENSMUSG00175025128	lncRNA gene	Chr10:115518522-115525284 (-)
C57BL/6NJ	ENSMUSG00215020327	lncRNA gene	Chr10:115164555-115171317 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032596	lncRNA gene	Chr10:114504319-114511108 (-)
CBA/J	ENSMUSG00210021528	lncRNA gene	Chr10:115360749-115367511 (-)
DBA/2J	ENSMUSG00185008963	lncRNA gene	Chr10:115471154-115477948 (-)
FVB/NJ	ENSMUSG00205029483	lncRNA gene	Chr10:114770125-114776887 (-)
JF1/MsJ	ENSUMUG00000023336	lncRNA gene	Chr10:116740464-116747261 (-)
LP/J	ENSMUSG00230025635	lncRNA gene	Chr10:117433683-117440445 (-)
NOD/ShiLtJ	ENSMUSG00190018084	lncRNA gene	Chr10:115573828-115580590 (-)
NZO/HlLtJ	ENSMUSG00225019207	lncRNA gene	Chr10:121680757-121687519 (-)
PWK/PhJ	ENSLUMG00010013141	lncRNA gene	Chr10:115143319-115150111 (-)
SPRET/EiJ	ENSMSPG00010016458	lncRNA gene	Chr10:117065048-117071813 (-)
WSB/EiJ	ENSIUOG00005014012	lncRNA gene	Chr10:115191466-115198260 (-)

Homology

• Gene Tree
  Gm38403
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm38403
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000112854 (Evidence)
• NCBI Gene
  216377

Representative Sequences			Length	Strain/Species
genomic	216377	NCBI Gene Model | MGI Sequence Detail	6763	C57BL/6J
transcript	NR_110482	RefSeq | MGI Sequence Detail	2357	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm38403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99511	Chr10:118760715-118760716 (-)	2,332 bp