Gm38304 Gene Detail

Summary

• Symbol
  Gm38304
• Name
  predicted gene, 38304

• Feature Type
  lncRNA gene
• IDs
  MGI:5611532
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:161796769-161854675 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1544 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611532	lncRNA gene	Chr1:161796769-161854675 (+)
129S1/SvImJ	ENSMUSG00200007818	lncRNA gene	Chr1:159295230-159353186 (+)
A/J	ENSMUSG00195024524	lncRNA gene	Chr1:158622536-158680522 (+)
AKR/J	ENSMUSG00220014689	lncRNA gene	Chr1:158407587-158465517 (+)
BALB/cJ	ENSMUSG00180040980	lncRNA gene	Chr1:158878974-158937772 (+)
C3H/HeJ	ENSMUSG00175048446	lncRNA gene	Chr1:158931193-158989213 (+)
C57BL/6NJ	ENSMUSG00215041665	lncRNA gene	Chr1:158815795-158873735 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002429	antisense lncRNA gene	Chr1:152558325-152618422 (+)
CAST/EiJ	ENSTCUG00005022742	lncRNA gene	Chr1:157457844-157515997 (+)
CBA/J	ENSMUSG00210021816	lncRNA gene	Chr1:158828232-158886184 (+)
DBA/2J	ENSMUSG00185012379	lncRNA gene	Chr1:163096433-163155242 (+)
FVB/NJ	ENSMUSG00205011178	lncRNA gene	Chr1:157902609-157960547 (+)
JF1/MsJ	ENSUMUG00000014033	lncRNA gene	Chr1:162257669-162316448 (+)
LP/J	ENSMUSG00230017601	lncRNA gene	Chr1:162693072-162751028 (+)
NOD/ShiLtJ	ENSMUSG00190045546	lncRNA gene	Chr1:158654307-158712226 (+)
NZO/HlLtJ	ENSMUSG00225005410	lncRNA gene	Chr1:166301658-166359684 (+)
PWK/PhJ	ENSLUMG00010045706	lncRNA gene	Chr1:157637615-157695807 (+)
SPRET/EiJ	ENSMSPG00010046218	lncRNA gene	Chr1:161025921-161083410 (+)
WSB/EiJ	ENSIUOG00005016170	lncRNA gene	Chr1:158207309-158265163 (+)

Homology

• Gene Tree
  Gm38304
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm38304
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103393 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103393	Ensembl Gene Model | MGI Sequence Detail	57907	C57BL/6J
transcript	ENSMUST00000161826	Ensembl | MGI Sequence Detail	600	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm38304:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9706	Chr1:161796748-161796828 (+)	19 bp
Tssr9707	Chr1:161796853-161796882 (+)	99 bp