Gm38300 Gene Detail

Summary

• Symbol
  Gm38300
• Name
  predicted gene, 38300

• Feature Type
  unclassified gene
• IDs
  MGI:5611528
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:178167166-178169035 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611528	unclassified gene	Chr1:178167166-178169035 (+)
129S1/SvImJ	ENSMUSG00200023591	unclassified gene	Chr1:175918737-175920606 (+)
A/J	ENSMUSG00195042753	unclassified gene	Chr1:175514412-175516283 (+)
AKR/J	ENSMUSG00220021616	unclassified gene	Chr1:174786679-174788551 (+)
BALB/cJ	ENSMUSG00180040070	unclassified gene	Chr1:175569748-175571617 (+)
C3H/HeJ	ENSMUSG00175044408	unclassified gene	Chr1:175745772-175747641 (+)
C57BL/6NJ	ENSMUSG00215028973	unclassified gene	Chr1:174970550-174972419 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000542	unclassified gene	Chr1:168209789-168213570 (+)
CAST/EiJ	ENSTCUG00005043111	unclassified gene	Chr1:173488577-173490449 (+)
CBA/J	ENSMUSG00210019480	unclassified gene	Chr1:175407771-175409640 (+)
DBA/2J	ENSMUSG00185031197	unclassified gene	Chr1:180026430-180028299 (+)
FVB/NJ	ENSMUSG00205039234	unclassified gene	Chr1:174455731-174457600 (+)
JF1/MsJ	ENSUMUG00000022803	unclassified gene	Chr1:179024018-179025890 (+)
LP/J	ENSMUSG00230033412	unclassified gene	Chr1:179584709-179586578 (+)
NOD/ShiLtJ	ENSMUSG00190038583	unclassified gene	Chr1:175431501-175433370 (+)
NZO/HlLtJ	ENSMUSG00225005105	unclassified gene	Chr1:183317625-183319494 (+)
PWK/PhJ	ENSLUMG00010016994	unclassified gene	Chr1:174278508-174280379 (+)
SPRET/EiJ	ENSMSPG00010034321	unclassified gene	Chr1:177741815-177743687 (+)
WSB/EiJ	ENSIUOG00005012038	unclassified gene	Chr1:174635589-174637459 (+)

Homology

• Gene Tree
  Gm38300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104279	Ensembl Gene Model | MGI Sequence Detail	1870	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10389	Chr1:178165435-178165467 (+)	-1,715 bp
Tssr10390	Chr1:178165536-178165552 (+)	-1,622 bp
Tssr10391	Chr1:178165759-178165763 (+)	-1,405 bp