Gm38288 Pseudogene Detail

Summary

• Symbol
  Gm38288
• Name
  predicted gene, 38288

• Feature Type
  pseudogene
• IDs
  MGI:5611516
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:59377092-59381516 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  231 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611516	pseudogene	Chr3:59377092-59381516 (-)
129S1/SvImJ	ENSMUSG00200023458	pseudogene	Chr3:56251736-56256162 (-)
A/J	ENSMUSG00195033242	pseudogene	Chr3:56171588-56176012 (-)
AKR/J	ENSMUSG00220031284	pseudogene	Chr3:56248694-56253114 (-)
BALB/cJ	ENSMUSG00180027041	pseudogene	Chr3:56246760-56251203 (-)
C3H/HeJ	ENSMUSG00175009091	pseudogene	Chr3:56088076-56092510 (-)
C57BL/6NJ	ENSMUSG00215010392	pseudogene	Chr3:56541905-56546333 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010867	pseudogene	Chr3:52857370-52861966 (-)
CAST/EiJ	ENSTCUG00005002489	pseudogene	Chr3:55851048-55855474 (-)
CBA/J	ENSMUSG00210004103	pseudogene	Chr3:56203755-56208191 (-)
DBA/2J	ENSMUSG00185028879	pseudogene	Chr3:56381387-56385815 (-)
FVB/NJ	ENSMUSG00205004292	pseudogene	Chr3:55361819-55366253 (-)
JF1/MsJ	ENSUMUG00000003590	pseudogene	Chr3:55780682-55785043 (-)
LP/J	ENSMUSG00230004769	pseudogene	Chr3:58383767-58388197 (-)
NOD/ShiLtJ	ENSMUSG00190036143	pseudogene	Chr3:56571172-56575594 (-)
NZO/HlLtJ	ENSMUSG00225002294	pseudogene	Chr3:61004022-61008452 (-)
PWK/PhJ	ENSLUMG00010005653	pseudogene	Chr3:55886157-55890497 (-)
SPRET/EiJ	ENSMSPG00010007953	pseudogene	Chr3:56786234-56791161 (+)
WSB/EiJ	ENSIUOG00005008907	pseudogene	Chr3:56356561-56360985 (-)

Homology

• Gene Tree
  Gm38288
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38288
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103211 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103211	Ensembl Gene Model | MGI Sequence Detail	4425	C57BL/6J
transcript	ENSMUST00000195330	Ensembl | MGI Sequence Detail	1320	Not Applicable

References

• Summaries
  All 4

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426