Gm38250 Gene Detail

Summary

• Symbol
  Gm38250
• Name
  predicted gene, 38250

• Feature Type
  lncRNA gene
• IDs
  MGI:5611478
  NCBI Gene: 108167550
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:106292809-106305274 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611478	lncRNA gene	Chr8:106292809-106308900 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004578	antisense lncRNA gene	Chr8:107858463-107872488 (+)
A/J	MGP_AJ_G0004558	antisense lncRNA gene	Chr8:103548326-103561078 (+)
AKR/J	MGP_AKRJ_G0004542	antisense lncRNA gene	Chr8:106542181-106556037 (+)
BALB/cJ	MGP_BALBcJ_G0004543	antisense lncRNA gene	Chr8:103737238-103754699 (+)
C3H/HeJ	MGP_C3HHeJ_G0004492	antisense lncRNA gene	Chr8:107286409-107301835 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004692	antisense lncRNA gene	Chr8:111818736-111838576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004143	antisense lncRNA gene	Chr8:96691462-96702805 (+)
CAST/EiJ	MGP_CASTEiJ_G0004451	antisense lncRNA gene	Chr8:106787494-106799859 (+)
CBA/J	MGP_CBAJ_G0004486	antisense lncRNA gene	Chr8:115425337-115437040 (+)
DBA/2J	MGP_DBA2J_G0004501	antisense lncRNA gene	Chr8:102894271-102906306 (+)
FVB/NJ	MGP_FVBNJ_G0004518	antisense lncRNA gene	Chr8:101822169-101837917 (+)
LP/J	MGP_LPJ_G0004582	antisense lncRNA gene	Chr8:108061549-108074489 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004507	antisense lncRNA gene	Chr8:118616125-118631385 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004692	antisense lncRNA gene	Chr8:106511417-106526255 (+)
PWK/PhJ	MGP_PWKPhJ_G0004403	antisense lncRNA gene	Chr8:102285363-102297235 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004344	antisense lncRNA gene	Chr8:105189040-105204181 (+)
WSB/EiJ	MGP_WSBEiJ_G0004491	antisense lncRNA gene	Chr8:107173688-107188473 (+)

Homology

• Gene Tree
  Gm38250
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  5

• Ensembl
  ENSMUSG00000104168 (Evidence)
• NCBI Gene
  108167550

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104168	Ensembl Gene Model | MGI Sequence Detail	12466	C57BL/6J
transcript	ENSMUST00000245478	Ensembl | MGI Sequence Detail	1379	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38250:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79153	Chr8:106292803-106292819 (+)	2 bp