Gm38250 Gene Detail

Summary

• Symbol
  Gm38250
• Name
  predicted gene, 38250

• Feature Type
  lncRNA gene
• IDs
  MGI:5611478
  NCBI Gene: 108167550
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:106292812-106308900 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  447 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611478	lncRNA gene	Chr8:106292695-106321066 (+)
129S1/SvImJ	ENSMUSG00200014830	lncRNA gene	Chr8:100572387-100584860 (+)
A/J	ENSMUSG00195021451	lncRNA gene	Chr8:100894851-100907314 (+)
AKR/J	ENSMUSG00220015428	lncRNA gene	Chr8:101028784-101049987 (+)
BALB/cJ	ENSMUSG00180026310	lncRNA gene	Chr8:100900674-100913151 (+)
C3H/HeJ	ENSMUSG00175025952	lncRNA gene	Chr8:100957382-100969845 (+)
C57BL/6NJ	ENSMUSG00215038416	lncRNA gene	Chr8:100571754-100584224 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004143	antisense lncRNA gene	Chr8:96691462-96702805 (+)
CAST/EiJ	ENSTCUG00005024037	lncRNA gene	Chr8:100336894-100349060 (+)
CBA/J	ENSMUSG00210036271	lncRNA gene	Chr8:100885094-100897561 (+)
DBA/2J	ENSMUSG00185005996	lncRNA gene	Chr8:106993873-107006338 (+)
FVB/NJ	ENSMUSG00205018323	lncRNA gene	Chr8:99869390-99881859 (+)
JF1/MsJ	ENSUMUG00000014892	lncRNA gene	Chr8:109327076-109339540 (+)
LP/J	ENSMUSG00230035932	lncRNA gene	Chr8:110674266-110686733 (+)
NOD/ShiLtJ	ENSMUSG00190028711	lncRNA gene	Chr8:101024294-101036766 (+)
NZO/HlLtJ	ENSMUSG00225022882	lncRNA gene	Chr8:114024797-114037261 (+)
PWK/PhJ	ENSLUMG00010004396	lncRNA gene	Chr8:100808824-100820866 (+)
SPRET/EiJ	ENSMSPG00010041118	lncRNA gene	Chr8:102887206-102899408 (+)
WSB/EiJ	ENSIUOG00005033448	lncRNA gene	Chr8:101697017-101709287 (+)

Homology

• Gene Tree
  Gm38250
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  5

• Ensembl
  ENSMUSG00000104168 (Evidence)
• NCBI Gene
  108167550

Representative Sequences			Length	Strain/Species
genomic	108167550	NCBI Gene Model | MGI Sequence Detail	16089	C57BL/6J
transcript	NR_168528	RefSeq | MGI Sequence Detail	2020	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38250:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79153	Chr8:106292803-106292819 (+)	-1 bp