Gm38246 Gene Detail

Summary

• Symbol
  Gm38246
• Name
  predicted gene, 38246

• Feature Type
  lncRNA gene
• IDs
  MGI:5611474
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:51011081-51012591 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  85

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611474	lncRNA gene	Chr3:51011081-51012591 (+)
129S1/SvImJ	ENSMUSG00200000591	lncRNA gene	Chr1:111604174-111605684 (+)
129S1/SvImJ	ENSMUSG00200000782	lncRNA gene	Chr3:47836641-47838151 (+)
129S1/SvImJ	ENSMUSG00200024026	lncRNA gene	Chr3:59550350-59551860 (+)
129S1/SvImJ	ENSMUSG00200022722	lncRNA gene	Chr11:18707782-18709291 (-)
129S1/SvImJ	ENSMUSG00200000628	lncRNA gene	Chr3:47840423-47841933 (+)
129S1/SvImJ	ENSMUSG00200025116	lncRNA gene	Chr12:2631248-2632757 (-)
129S1/SvImJ	ENSMUSG00200015210	lncRNA gene	Chr4:113682255-113683765 (-)
129S1/SvImJ	ENSMUSG00200016320	lncRNA gene	Chr16:78893192-78894702 (-)
129S1/SvImJ	ENSMUSG00200002428	lncRNA gene	Chr1:46258890-46260400 (-)
129S1/SvImJ	ENSMUSG00200050976	lncRNA gene	Chr7:89788065-89789575 (-)
A/J	ENSMUSG00195002262	lncRNA gene	Chr1:43065570-43067077 (+)
A/J	ENSMUSG00195019423	lncRNA gene	Chr19:15735141-15736651 (+)
A/J	ENSMUSG00195002516	lncRNA gene	Chr18:27317239-27318749 (-)
A/J	ENSMUSG00195054881	lncRNA gene	Chr7:94287799-94289309 (-)
A/J	ENSMUSG00195004540	lncRNA gene	Chr8:47803635-47805146 (+)
A/J	ENSMUSG00195001892	lncRNA gene	Chr1:43061797-43063304 (+)
A/J	ENSMUSG00195023951	lncRNA gene	Chr16:78661442-78662952 (-)
A/J	ENSMUSG00195000901	lncRNA gene	Chr3:46269049-46270557 (-)
A/J	ENSMUSG00195008130	lncRNA gene	Chr1:110895874-110897384 (+)
A/J	ENSMUSG00195002268	lncRNA gene	Chr1:43069343-43070850 (+)
A/J	ENSMUSG00195016951	lncRNA gene	ChrX:145529071-145530582 (-)
AKR/J	ENSMUSG00220015885	lncRNA gene	Chr3:47851470-47853584 (+)
BALB/cJ	ENSMUSG00180000549	lncRNA gene	Chr3:47874298-47876408 (+)
C3H/HeJ	ENSMUSG00175002202	lncRNA gene	Chr3:47710740-47712858 (+)
C57BL/6NJ	ENSMUSG00215007737	lncRNA gene	Chr3:67699414-67700923 (+)
C57BL/6NJ	ENSMUSG00215000997	lncRNA gene	Chr4:62696389-62697899 (+)
C57BL/6NJ	ENSMUSG00215009804	lncRNA gene	Chr2:53126040-53127546 (-)
C57BL/6NJ	ENSMUSG00215012331	lncRNA gene	Chr8:47276219-47277730 (-)
C57BL/6NJ	ENSMUSG00215028283	lncRNA gene	Chr6:107383745-107385254 (-)
C57BL/6NJ	ENSMUSG00215003216	lncRNA gene	Chr1:46104238-46105748 (-)
C57BL/6NJ	ENSMUSG00215008459	lncRNA gene	Chr1:111142192-111143702 (+)
C57BL/6NJ	ENSMUSG00215027797	lncRNA gene	Chr12:2585417-2586926 (-)
C57BL/6NJ	ENSMUSG00215001782	lncRNA gene	Chr16:78865280-78866790 (-)
C57BL/6NJ	ENSMUSG00215000682	lncRNA gene	Chr3:48140489-48141999 (+)
C57BL/6NJ	ENSMUSG00215000559	lncRNA gene	Chr3:48144271-48145781 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009773	lncRNA gene	Chr3:47525563-47527775 (+)
CBA/J	ENSMUSG00210030122	lncRNA gene	Chr1:42792349-42793856 (+)
CBA/J	ENSMUSG00210016348	lncRNA gene	Chr18:27302250-27303760 (-)
CBA/J	ENSMUSG00210022707	lncRNA gene	Chr18:47379266-47380776 (+)
CBA/J	ENSMUSG00210021057	lncRNA gene	Chr6:107218106-107219615 (-)
CBA/J	ENSMUSG00210030115	lncRNA gene	Chr1:42788576-42790083 (+)
CBA/J	ENSMUSG00210039173	lncRNA gene	Chr10:85244923-85246433 (+)
CBA/J	ENSMUSG00210029099	lncRNA gene	Chr1:42784803-42786310 (+)
CBA/J	ENSMUSG00210019374	lncRNA gene	Chr8:47321477-47322988 (+)
CBA/J	ENSMUSG00210001133	lncRNA gene	Chr3:46300098-46301606 (-)
CBA/J	ENSMUSG00210012975	lncRNA gene	Chr19:15677949-15679459 (+)
CBA/J	ENSMUSG00210048857	lncRNA gene	Chr7:91475303-91476813 (-)
DBA/2J	ENSMUSG00185029093	lncRNA gene	Chr18:47280246-47281756 (+)
DBA/2J	ENSMUSG00185014213	lncRNA gene	Chr19:16094764-16096274 (+)
DBA/2J	ENSMUSG00185008941	lncRNA gene	Chr8:53230337-53231848 (-)
DBA/2J	ENSMUSG00185057226	lncRNA gene	Chr7:95790515-95792025 (-)
DBA/2J	ENSMUSG00185031744	lncRNA gene	Chr1:43916376-43917883 (+)
DBA/2J	ENSMUSG00185031874	lncRNA gene	Chr1:43920149-43921656 (+)
DBA/2J	ENSMUSG00185031886	lncRNA gene	Chr1:43923922-43925429 (+)
DBA/2J	ENSMUSG00185012331	lncRNA gene	Chr11:18665159-18666668 (-)
DBA/2J	ENSMUSG00185005462	lncRNA gene	Chr16:78899810-78901320 (-)
DBA/2J	ENSMUSG00185023493	lncRNA gene	Chr18:27250572-27252082 (-)
DBA/2J	ENSMUSG00185000470	lncRNA gene	Chr3:46528284-46529792 (-)
FVB/NJ	ENSMUSG00205009970	lncRNA gene	Chr3:66421000-66422506 (+)
FVB/NJ	ENSMUSG00205001119	lncRNA gene	Chr4:61021124-61022634 (+)
FVB/NJ	ENSMUSG00205049353	lncRNA gene	Chr7:91425639-91427149 (-)
FVB/NJ	ENSMUSG00205016830	lncRNA gene	Chr16:78736015-78737525 (-)
FVB/NJ	ENSMUSG00205003918	lncRNA gene	Chr12:2437684-2439193 (-)
FVB/NJ	ENSMUSG00205016299	lncRNA gene	Chr18:46756390-46757900 (+)
FVB/NJ	ENSMUSG00205039590	lncRNA gene	Chr11:5108668-5110177 (+)
FVB/NJ	ENSMUSG00205008906	lncRNA gene	Chr1:110371783-110373293 (+)
FVB/NJ	ENSMUSG00205022355	lncRNA gene	Chr2:53694959-53696469 (+)
FVB/NJ	ENSMUSG00205031767	lncRNA gene	Chr4:113077534-113079044 (-)
FVB/NJ	ENSMUSG00205009455	lncRNA gene	Chr3:47043359-47044869 (+)
JF1/MsJ	ENSUMUG00000025491	lncRNA gene	Chr3:47477610-47479806 (+)
LP/J	ENSMUSG00230018623	lncRNA gene	Chr8:56891890-56893401 (-)
LP/J	ENSMUSG00230049120	lncRNA gene	Chr7:101892801-101894311 (-)
LP/J	ENSMUSG00230001977	lncRNA gene	Chr2:54899471-54900977 (-)
LP/J	ENSMUSG00230009423	lncRNA gene	Chr1:114707744-114709254 (+)
LP/J	ENSMUSG00230000576	lncRNA gene	Chr3:50008894-50010404 (+)
LP/J	ENSMUSG00230021112	lncRNA gene	Chr16:81454060-81455570 (-)
LP/J	ENSMUSG00230002908	lncRNA gene	Chr3:61687064-61688574 (+)
LP/J	ENSMUSG00230013075	lncRNA gene	Chr12:4466224-4467733 (-)
LP/J	ENSMUSG00230000463	lncRNA gene	Chr3:50012676-50014186 (+)
LP/J	ENSMUSG00230001654	lncRNA gene	Chr1:46998322-46999832 (-)
NOD/ShiLtJ	ENSMUSG00190000300	lncRNA gene	Chr3:48189329-48191439 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010212	lncRNA gene	Chr3:47642830-47644977 (+)
SPRET/EiJ	ENSMSPG00010007350	lncRNA gene	Chr3:48300290-48302298 (+)
WSB/EiJ	ENSIUOG00005000596	lncRNA gene	Chr3:47990729-47992786 (+)

Homology

• Gene Tree
  Gm38246
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38246
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  87

• Ensembl
  ENSMUSG00000103464 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103464	Ensembl Gene Model | MGI Sequence Detail	1511	C57BL/6J
transcript	ENSMUST00000194318	Ensembl | MGI Sequence Detail	1511	Not Applicable

References

• Summaries
  All 6

  Phenotypes 5
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:157707 Puligilla C, et al., Sox2 induces neuronal formation in the developing mammalian cochlea. J Neurosci. 2010 Jan 13;30(2):714-22