Gm38225 Gene Detail

Summary

• Symbol
  Gm38225
• Name
  predicted gene, 38225

• Feature Type
  lncRNA gene
• IDs
  MGI:5611453
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:37085704-37086096 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611453	lncRNA gene	Chr18:37085704-37086096 (-)
129S1/SvImJ	ENSMUSG00200045004	lncRNA gene	Chr18:34091525-34091917 (-)
A/J	ENSMUSG00195039094	lncRNA gene	Chr18:34244507-34244899 (-)
AKR/J	ENSMUSG00220017402	lncRNA gene	Chr18:34234666-34235058 (-)
BALB/cJ	ENSMUSG00180022003	lncRNA gene	Chr18:34694162-34694554 (-)
C3H/HeJ	ENSMUSG00175043923	lncRNA gene	Chr18:34216175-34216567 (-)
C57BL/6NJ	ENSMUSG00215030765	lncRNA gene	Chr18:33955180-33955572 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003059	antisense lncRNA gene	Chr18:34223853-34224245 (-)
CAST/EiJ	ENSTCUG00005024589	lncRNA gene	Chr18:33859540-33859932 (-)
CBA/J	ENSMUSG00210021726	lncRNA gene	Chr18:34236184-34236576 (-)
DBA/2J	ENSMUSG00185021127	lncRNA gene	Chr18:34170794-34171186 (-)
FVB/NJ	ENSMUSG00205036300	lncRNA gene	Chr18:33896462-33896854 (-)
JF1/MsJ	ENSUMUG00000047850	lncRNA gene	Chr18:34324353-34324745 (-)
LP/J	ENSMUSG00230049364	lncRNA gene	Chr18:36288220-36288612 (-)
NOD/ShiLtJ	ENSMUSG00190024014	lncRNA gene	Chr18:33964505-33964897 (-)
NZO/HlLtJ	ENSMUSG00225046906	lncRNA gene	Chr18:36186315-36186707 (-)
PWK/PhJ	ENSLUMG00010013560	lncRNA gene	Chr18:34486956-34487348 (-)
SPRET/EiJ	ENSMSPG00010024573	lncRNA gene	Chr18:34536411-34536803 (-)
WSB/EiJ	ENSIUOG00005008724	lncRNA gene	Chr18:33944174-33944566 (-)

Homology

• Gene Tree
  Gm38225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm38225
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102634 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102634	Ensembl Gene Model | MGI Sequence Detail	393	C57BL/6J
transcript	ENSMUST00000194001	Ensembl | MGI Sequence Detail	393	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)