Gm38204 Gene Detail

Summary

• Symbol
  Gm38204
• Name
  predicted gene, 38204

• Feature Type
  lncRNA gene
• IDs
  MGI:5611432
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:170800942-170814043 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  577 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611432	lncRNA gene	Chr1:170800942-170814043 (+)
129S1/SvImJ	ENSMUSG00200048254	lncRNA gene	Chr1:168280688-168285133 (+)
A/J	ENSMUSG00195048987	lncRNA gene	Chr1:167592649-167597048 (+)
AKR/J	ENSMUSG00220032276	lncRNA gene	Chr1:167292932-167297305 (+)
BALB/cJ	ENSMUSG00180046635	lncRNA gene	Chr1:167860576-167864949 (+)
C3H/HeJ	ENSMUSG00175048973	lncRNA gene	Chr1:167936209-167940655 (+)
C57BL/6NJ	ENSMUSG00215045112	lncRNA gene	Chr1:167742001-167746374 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002443	antisense lncRNA gene	Chr1:161225104-161230197 (+)
CAST/EiJ	ENSTCUG00005046718	lncRNA gene	Chr1:166249602-166254188 (+)
CBA/J	ENSMUSG00210044273	lncRNA gene	Chr1:167825567-167829940 (+)
DBA/2J	ENSMUSG00185012157	lncRNA gene	Chr1:172042577-172046950 (+)
FVB/NJ	ENSMUSG00205041788	lncRNA gene	Chr1:166794098-166798497 (+)
JF1/MsJ	ENSUMUG00000013021	lncRNA gene	Chr1:171185261-171189634 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190041159	lncRNA gene	Chr1:167591969-167596380 (+)
NZO/HlLtJ	ENSMUSG00225005189	lncRNA gene	Chr1:175266469-175270883 (+)
PWK/PhJ	ENSLUMG00010037103	lncRNA gene	Chr1:166582004-166586403 (+)
SPRET/EiJ	ENSMSPG00010048833	lncRNA gene	Chr1:170137013-170141465 (+)
WSB/EiJ	ENSIUOG00005039963	lncRNA gene	Chr1:166994220-166998640 (+)

Homology

• Gene Tree
  Gm38204
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm38204
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45

• Ensembl
  ENSMUSG00000103676 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103676	Ensembl Gene Model | MGI Sequence Detail	13102	C57BL/6J
transcript	ENSMUST00000246919	Ensembl | MGI Sequence Detail	1365	Not Applicable

References

• Summaries
  All 12

  Phenotypes 10
• Earliest
  J:247864 Ho NI, et al., C1q-Dependent Dendritic Cell Cross-Presentation of In Vivo-Formed Antigen-Antibody Complexes. J Immunol. 2017 Jun 01;198(11):4235-4243
• Latest
  J:330538 Sahin M, et al., Antibody bivalency improves antiviral efficacy by inhibiting virion release independently of Fc gamma receptors. Cell Rep. 2022 Feb 1;38(5):110303

TSS for Gm38204:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9937	Chr1:170806375-170806386 (+)	5,439 bp
Tssr9938	Chr1:170807334-170807339 (+)	6,395 bp