Gm38182 Gene Detail

Summary

• Symbol
  Gm38182
• Name
  predicted gene, 38182

• Feature Type
  lncRNA gene
• IDs
  MGI:5611410
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr18:37956932-37973435 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  391 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611410	lncRNA gene	Chr18:37956932-37973435 (+)
129S1/SvImJ	ENSMUSG00200045557	lncRNA gene	Chr18:34956266-34972762 (+)
A/J	ENSMUSG00195038139	lncRNA gene	Chr18:35106958-35123460 (+)
AKR/J	ENSMUSG00220017242	lncRNA gene	Chr18:35076900-35093400 (+)
BALB/cJ	ENSMUSG00180020699	lncRNA gene	Chr18:35556596-35573108 (+)
C3H/HeJ	ENSMUSG00175040035	lncRNA gene	Chr18:35071666-35088157 (+)
C57BL/6NJ	ENSMUSG00215029249	lncRNA gene	Chr18:34826492-34843003 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013495	unclassified non-coding RNA gene	Chr18:35010493-35026803 (+)
CAST/EiJ	ENSTCUG00005024523	lncRNA gene	Chr18:34687177-34703635 (+)
CBA/J	ENSMUSG00210021917	lncRNA gene	Chr18:35098615-35115131 (+)
DBA/2J	ENSMUSG00185020511	lncRNA gene	Chr18:35033230-35049744 (+)
FVB/NJ	ENSMUSG00205038696	lncRNA gene	Chr18:34735198-34751699 (+)
JF1/MsJ	ENSUMUG00000049906	lncRNA gene	Chr18:35167574-35184132 (+)
LP/J	ENSMUSG00230048912	lncRNA gene	Chr18:37150416-37166914 (+)
NOD/ShiLtJ	ENSMUSG00190022976	lncRNA gene	Chr18:34819988-34836478 (+)
NZO/HlLtJ	ENSMUSG00225047564	lncRNA gene	Chr18:37057232-37073749 (+)
PWK/PhJ	ENSLUMG00010012819	lncRNA gene	Chr18:35311164-35327665 (+)
SPRET/EiJ	ENSMSPG00010022739	lncRNA gene	Chr18:35346479-35362968 (+)
WSB/EiJ	ENSIUOG00005008430	lncRNA gene	Chr18:34813046-34829557 (+)

Homology

• Gene Tree
  Gm38182
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm38182
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000102828 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102828	Ensembl Gene Model | MGI Sequence Detail	16504	C57BL/6J
transcript	ENSMUST00000192984	Ensembl | MGI Sequence Detail	993	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for Gm38182:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150758	Chr18:37957124-37957133 (+)	197 bp
Tssr150759	Chr18:37957143-37957156 (+)	218 bp
Tssr150760	Chr18:37957634-37957687 (+)	729 bp
Tssr150761	Chr18:37957999-37958025 (+)	1,080 bp
Tssr150762	Chr18:37958056-37958109 (+)	1,151 bp
Tssr150763	Chr18:37959753-37959760 (+)	2,825 bp
Tssr150764	Chr18:37959770-37959787 (+)	2,847 bp
Tssr150765	Chr18:37963654-37963658 (+)	6,724 bp