Gm38171 Gene Detail

Summary

• Symbol
  Gm38171
• Name
  predicted gene, 38171

• Feature Type
  lncRNA gene
• IDs
  MGI:5611399
  NCBI Gene: 118568498
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:11324402-11338972 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  502 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611399	lncRNA gene	Chr2:11215317-11338972 (-)
129S1/SvImJ	ENSMUSG00200032757	lncRNA gene	Chr2:8217347-8221853 (-)
A/J	ENSMUSG00195019694	lncRNA gene	Chr2:8338189-8342687 (-)
AKR/J	ENSMUSG00220007071	lncRNA gene	Chr2:8307559-8312073 (-)
BALB/cJ	ENSMUSG00180033668	lncRNA gene	Chr2:8388052-8392550 (-)
C3H/HeJ	ENSMUSG00175018605	lncRNA gene	Chr2:8322452-8326954 (-)
C57BL/6NJ	ENSMUSG00215022380	lncRNA gene	Chr2:8402249-8406755 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005334	lincRNA gene	Chr2:7795516-7799769 (-)
CAST/EiJ	ENSTCUG00005005246	lncRNA gene	Chr2:8193319-8197762 (-)
CBA/J	ENSMUSG00210028626	lncRNA gene	Chr2:8368481-8372979 (-)
DBA/2J	ENSMUSG00185012966	lncRNA gene	Chr2:8283423-8287921 (-)
FVB/NJ	ENSMUSG00205031179	lncRNA gene	Chr2:8276894-8281404 (-)
JF1/MsJ	ENSUMUG00000004306	lncRNA gene	Chr2:8248981-8253572 (-)
LP/J	ENSMUSG00230021522	lncRNA gene	Chr2:10229695-10234197 (-)
NOD/ShiLtJ	ENSMUSG00190006469	lncRNA gene	Chr2:8305152-8309646 (-)
NZO/HlLtJ	ENSMUSG00225002290	lncRNA gene	Chr2:17975577-17980083 (-)
PWK/PhJ	ENSLUMG00010033408	lncRNA gene	Chr2:8360980-8365455 (-)
SPRET/EiJ	ENSMSPG00010031364	lncRNA gene	Chr2:8431942-8444466 (-)
WSB/EiJ	ENSIUOG00005025144	lncRNA gene	Chr2:8351728-8356222 (-)

Homology

• Gene Tree
  Gm38171
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000102196 (Evidence)
• NCBI Gene
  118568498

Representative Sequences			Length	Strain/Species
genomic	118568498	NCBI Gene Model | MGI Sequence Detail	14571	C57BL/6J
transcript	XR_004940838	RefSeq | MGI Sequence Detail	2165	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm38171:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22609	Chr2:11338186-11338209 (-)	774 bp
Tssr404	Chr2:11337404-11337427 (-)	1,556 bp
Tssr22608	Chr2:11337382-11337398 (-)	1,582 bp
Tssr22607	Chr2:11337362-11337378 (-)	1,602 bp