Gm38154 Pseudogene Detail

Summary

• Symbol
  Gm38154
• Name
  predicted gene, 38154

• Feature Type
  pseudogene
• IDs
  MGI:5611382
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:17724852-17725191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611382	pseudogene	Chr3:17724852-17725191 (+)
129S1/SvImJ	ENSMUSG00200018297	pseudogene	Chr3:14457670-14458009 (+)
A/J	ENSMUSG00195016526	pseudogene	Chr3:14528650-14528989 (+)
AKR/J	ENSMUSG00220009175	pseudogene	Chr3:14498886-14499225 (+)
BALB/cJ	ENSMUSG00180001033	pseudogene	Chr3:14554760-14555099 (+)
C3H/HeJ	ENSMUSG00175003225	pseudogene	Chr3:14551694-14552033 (+)
C57BL/6NJ	ENSMUSG00215001446	pseudogene	Chr3:14786203-14786542 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010759	pseudogene	Chr3:13032247-13032588 (+)
CAST/EiJ	ENSTCUG00005024666	pseudogene	Chr3:14499497-14499836 (+)
CBA/J	ENSMUSG00210001681	pseudogene	Chr3:14520585-14520924 (+)
DBA/2J	ENSMUSG00185000701	pseudogene	Chr3:14676533-14676872 (+)
FVB/NJ	ENSMUSG00205002532	pseudogene	Chr3:14071922-14072261 (+)
JF1/MsJ	ENSUMUG00000018850	pseudogene	Chr3:14342211-14342550 (+)
LP/J	ENSMUSG00230004720	pseudogene	Chr3:16661281-16661620 (+)
NOD/ShiLtJ	ENSMUSG00190002528	pseudogene	Chr3:14879734-14880073 (+)
NZO/HlLtJ	ENSMUSG00225001134	pseudogene	Chr3:19258533-19258872 (+)
PWK/PhJ	ENSLUMG00010003278	pseudogene	Chr3:14415932-14416271 (+)
SPRET/EiJ	ENSMSPG00010001885	pseudogene	Chr3:14360852-14361189 (+)
WSB/EiJ	ENSIUOG00005001529	pseudogene	Chr3:14725185-14725524 (+)

Homology

• Gene Tree
  Gm38154
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38154
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104242 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104242	Ensembl Gene Model | MGI Sequence Detail	340	C57BL/6J
transcript	ENSMUST00000195444	Ensembl | MGI Sequence Detail	340	Not Applicable

References

• Summaries
  All 4

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426