Gm38143 Gene Detail

Summary

• Symbol
  Gm38143
• Name
  predicted gene, 38143

• Feature Type
  lncRNA gene
• IDs
  MGI:5611371
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:73598171-73607790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  393 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611371	lncRNA gene	Chr7:73598171-73607790 (+)
129S1/SvImJ	ENSMUSG00200012387	lncRNA gene	Chr7:60363965-60373613 (+)
A/J	ENSMUSG00195014296	lncRNA gene	Chr7:64758181-64767831 (+)
AKR/J	ENSMUSG00220020726	lncRNA gene	Chr7:58304602-58314250 (+)
BALB/cJ	ENSMUSG00180013600	lncRNA gene	Chr7:61467269-61476917 (+)
C3H/HeJ	ENSMUSG00175021698	lncRNA gene	Chr7:62265047-62274693 (+)
C57BL/6NJ	ENSMUSG00215030563	lncRNA gene	Chr7:61399187-61408806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013800	unclassified non-coding RNA gene	Chr7:76468345-76469587 (+)
CAST/EiJ	ENSTCUG00005004477	lncRNA gene	Chr7:64894691-64904318 (+)
CBA/J	ENSMUSG00210023947	lncRNA gene	Chr7:62130063-62139714 (+)
DBA/2J	ENSMUSG00185001426	lncRNA gene	Chr7:66452794-66462444 (+)
FVB/NJ	ENSMUSG00205027757	lncRNA gene	Chr7:62112772-62122436 (+)
JF1/MsJ	ENSUMUG00000027681	lncRNA gene	Chr7:71184210-71194020 (+)
LP/J	ENSMUSG00230015637	lncRNA gene	Chr7:72501154-72510800 (+)
NOD/ShiLtJ	ENSMUSG00190020292	lncRNA gene	Chr7:62218886-62228532 (+)
NZO/HlLtJ	ENSMUSG00225043001	lncRNA gene	Chr7:70768965-70778615 (+)
PWK/PhJ	ENSLUMG00010017579	lncRNA gene	Chr7:60738522-60748307 (+)
SPRET/EiJ	ENSMSPG00010024226	lncRNA gene	Chr7:61162174-61171759 (+)
WSB/EiJ	ENSIUOG00005021983	lncRNA gene	Chr7:62599796-62609439 (+)

Homology

• Gene Tree
  Gm38143
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38143
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102384 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102384	Ensembl Gene Model | MGI Sequence Detail	9620	C57BL/6J
transcript	ENSMUST00000191751	Ensembl | MGI Sequence Detail	644	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:29904 Johnson DK, et al., Molecular analysis of 36 mutations at the mouse pink-eyed dilution (p) locus. Genetics. 1995 Dec;141(4):1563-71