Gm38132 Gene Detail

Summary

• Symbol
  Gm38132
• Name
  predicted gene, 38132

• Feature Type
  lncRNA gene
• IDs
  MGI:5611360
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52093945-52163930 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2208 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611360	lncRNA gene	Chr3:52093945-52163930 (+)
129S1/SvImJ	ENSMUSG00200000424	lncRNA gene	Chr3:48924624-48926008 (+)
A/J	ENSMUSG00195000787	lncRNA gene	Chr3:48881674-48883058 (+)
AKR/J	ENSMUSG00220015843	lncRNA gene	Chr3:48936205-48937589 (+)
BALB/cJ	ENSMUSG00180000622	lncRNA gene	Chr3:48965072-48966456 (+)
C3H/HeJ	ENSMUSG00175002216	lncRNA gene	Chr3:48795439-48796823 (+)
C57BL/6NJ	ENSMUSG00215000590	lncRNA gene	Chr3:49229172-49230556 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013635	unclassified non-coding RNA gene	Chr3:45827815-45829208 (+)
CAST/EiJ	ENSTCUG00005009893	lncRNA gene	Chr3:48603964-48605344 (+)
CBA/J	ENSMUSG00210000614	lncRNA gene	Chr3:48907604-48908988 (+)
DBA/2J	ENSMUSG00185000294	lncRNA gene	Chr3:49144664-49146048 (+)
FVB/NJ	ENSMUSG00205009862	lncRNA gene	Chr3:48127618-48129002 (+)
JF1/MsJ	ENSUMUG00000028202	lncRNA gene	Chr3:48564239-48565619 (+)
LP/J	ENSMUSG00230000319	lncRNA gene	Chr3:51096769-51098153 (+)
NOD/ShiLtJ	ENSMUSG00190000732	lncRNA gene	Chr3:49274448-49275832 (+)
NZO/HlLtJ	ENSMUSG00225017204	lncRNA gene	Chr3:53719067-53720451 (+)
PWK/PhJ	ENSLUMG00010010465	lncRNA gene	Chr3:48732385-48733765 (+)
SPRET/EiJ	ENSMSPG00010007222	lncRNA gene	Chr3:49387101-49388489 (+)
WSB/EiJ	ENSIUOG00005000440	lncRNA gene	Chr3:49066162-49067546 (+)

Homology

• Gene Tree
  Gm38132
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38132
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000104055 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104055	Ensembl Gene Model | MGI Sequence Detail	69986	C57BL/6J
transcript	ENSMUST00000194488	Ensembl | MGI Sequence Detail	2031	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:157707 Puligilla C, et al., Sox2 induces neuronal formation in the developing mammalian cochlea. J Neurosci. 2010 Jan 13;30(2):714-22

TSS for Gm38132:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29088	Chr3:52094004-52094023 (+)	69 bp