Gm38102 Gene Detail

Summary

• Symbol
  Gm38102
• Name
  predicted gene, 38102

• Feature Type
  lncRNA gene
• IDs
  MGI:5611330
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:123272002-123280241 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611330	lncRNA gene	Chr5:123272002-123280241 (+)
129S1/SvImJ	ENSMUSG00200030422	lncRNA gene	Chr5:117002747-117006500 (+)
A/J	ENSMUSG00195012906	lncRNA gene	Chr5:116524169-116527922 (+)
AKR/J	ENSMUSG00220046450	lncRNA gene	Chr5:116034539-116038293 (+)
BALB/cJ	ENSMUSG00180039510	lncRNA gene	Chr5:116639133-116642886 (+)
C3H/HeJ	ENSMUSG00175034914	lncRNA gene	Chr5:118654392-118658146 (+)
C57BL/6NJ	ENSMUSG00215044236	lncRNA gene	Chr5:116680242-116683999 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006190	lincRNA gene	Chr5:116150719-116154455 (+)
CAST/EiJ	ENSTCUG00005041139	lncRNA gene	Chr5:115944074-115947820 (+)
CBA/J	ENSMUSG00210010311	lncRNA gene	Chr5:117405163-117408917 (+)
DBA/2J	ENSMUSG00185055044	lncRNA gene	Chr5:120456414-120460169 (+)
FVB/NJ	ENSMUSG00205045750	lncRNA gene	Chr5:116310487-116314244 (+)
JF1/MsJ	ENSUMUG00000052316	lncRNA gene	Chr5:123314733-123318497 (+)
LP/J	ENSMUSG00230048032	lncRNA gene	Chr5:124524742-124528495 (+)
NOD/ShiLtJ	ENSMUSG00190044390	lncRNA gene	Chr5:116330825-116334579 (+)
NZO/HlLtJ	ENSMUSG00225014296	lncRNA gene	Chr5:132213183-132216940 (+)
PWK/PhJ	ENSLUMG00010045199	lncRNA gene	Chr5:115212040-115215886 (+)
SPRET/EiJ	ENSMSPG00010044159	lncRNA gene	Chr5:118526933-118530665 (+)
WSB/EiJ	ENSIUOG00005019259	lncRNA gene	Chr5:119018879-119022637 (+)

Homology

• Gene Tree
  Gm38102
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  103
• Chemically induced (other)
  1
• Gene trapped
  101
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38102
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000104156 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104156	Ensembl Gene Model | MGI Sequence Detail	8240	C57BL/6J
transcript	ENSMUST00000195992	Ensembl | MGI Sequence Detail	7354	Not Applicable

References

• Summaries
  All 10

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38102:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48758	Chr5:123273680-123273695 (+)	1,686 bp
Tssr48759	Chr5:123273854-123273865 (+)	1,858 bp
Tssr48760	Chr5:123273896-123273918 (+)	1,905 bp
Tssr48761	Chr5:123274702-123274735 (+)	2,717 bp
Tssr48762	Chr5:123276674-123276698 (+)	4,684 bp
Tssr48763	Chr5:123276718-123276773 (+)	4,744 bp