Gm38096 Gene Detail

Summary

• Symbol
  Gm38096
• Name
  predicted gene, 38096

• Feature Type
  lncRNA gene
• IDs
  MGI:5611324
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:83310709-83313097 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611324	lncRNA gene	Chr3:83310709-83313097 (+)
129S1/SvImJ	ENSMUSG00200019369	lncRNA gene	Chr3:80153100-80155473 (+)
A/J	ENSMUSG00195012133	lncRNA gene	Chr3:80173504-80175885 (+)
AKR/J	ENSMUSG00220001548	lncRNA gene	Chr3:80118226-80120602 (+)
BALB/cJ	ENSMUSG00180001960	lncRNA gene	Chr3:80290978-80293354 (+)
C3H/HeJ	ENSMUSG00175007893	lncRNA gene	Chr3:80100124-80102505 (+)
C57BL/6NJ	ENSMUSG00215002045	lncRNA gene	Chr3:80550800-80553188 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005662	lincRNA gene	Chr3:76190349-76192698 (+)
CAST/EiJ	ENSTCUG00005002056	lncRNA gene	Chr3:79639724-79642112 (+)
CBA/J	ENSMUSG00210026112	lncRNA gene	Chr3:80244815-80247196 (+)
DBA/2J	ENSMUSG00185012831	lncRNA gene	Chr3:80375639-80378015 (+)
FVB/NJ	ENSMUSG00205006569	lncRNA gene	Chr3:79155163-79157544 (+)
JF1/MsJ	ENSUMUG00000002350	lncRNA gene	Chr3:79938144-79940505 (+)
LP/J	ENSMUSG00230036902	lncRNA gene	Chr3:82355584-82357957 (+)
NOD/ShiLtJ	ENSMUSG00190002899	lncRNA gene	Chr3:80606179-80608560 (+)
NZO/HlLtJ	ENSMUSG00225007905	lncRNA gene	Chr3:85101072-85103441 (+)
PWK/PhJ	ENSLUMG00010006807	lncRNA gene	Chr3:79987977-79990356 (+)
SPRET/EiJ	ENSMSPG00010017812	lncRNA gene	Chr3:80772963-80775351 (+)
WSB/EiJ	ENSIUOG00005003187	lncRNA gene	Chr3:80603905-80606283 (+)

Homology

• Gene Tree
  Gm38096
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38096
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103459 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103459	Ensembl Gene Model | MGI Sequence Detail	2389	C57BL/6J
transcript	ENSMUST00000193692	Ensembl | MGI Sequence Detail	2389	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;