Gm38030 Pseudogene Detail

Summary

• Symbol
  Gm38030
• Name
  predicted gene, 38030

• Feature Type
  pseudogene
• IDs
  MGI:5611258
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:85821950-85822424 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611258	pseudogene	Chr3:85821950-85822424 (+)
129S1/SvImJ	ENSMUSG00200040476	pseudogene	Chr3:82658397-82658871 (+)
A/J	ENSMUSG00195053956	pseudogene	Chr3:82684817-82685291 (+)
AKR/J	ENSMUSG00220051754	pseudogene	Chr3:82630242-82630716 (+)
BALB/cJ	ENSMUSG00180048576	pseudogene	Chr3:82799812-82800286 (+)
C3H/HeJ	ENSMUSG00175047830	pseudogene	Chr3:82611602-82612076 (+)
C57BL/6NJ	ENSMUSG00215050349	pseudogene	Chr3:83063905-83064379 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010934	pseudogene	Chr3:78684675-78685142 (+)
CAST/EiJ	ENSTCUG00005001910	pseudogene	Chr3:82152460-82152934 (+)
CBA/J	ENSMUSG00210047995	pseudogene	Chr3:82755848-82756322 (+)
DBA/2J	ENSMUSG00185052881	pseudogene	Chr3:82888705-82889179 (+)
FVB/NJ	ENSMUSG00205006513	pseudogene	Chr3:81686556-81687030 (+)
JF1/MsJ	ENSUMUG00000050718	pseudogene	Chr3:82452017-82452491 (+)
LP/J	ENSMUSG00230037163	pseudogene	Chr3:84878818-84879292 (+)
NOD/ShiLtJ	ENSMUSG00190049357	pseudogene	Chr3:83146155-83146629 (+)
NZO/HlLtJ	ENSMUSG00225008118	pseudogene	Chr3:87614095-87614569 (+)
PWK/PhJ	ENSLUMG00010052754	pseudogene	Chr3:82540219-82540693 (+)
SPRET/EiJ	ENSMSPG00010051095	pseudogene	Chr3:83350186-83350660 (+)
WSB/EiJ	ENSIUOG00005050578	pseudogene	Chr3:83135804-83136278 (+)

Homology

• Gene Tree
  Gm38030
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38030
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103993 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103993	Ensembl Gene Model | MGI Sequence Detail	475	C57BL/6J
transcript	ENSMUST00000192376	Ensembl | MGI Sequence Detail	475	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm38030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29768	Chr3:85821910-85821911 (+)	-39 bp