Gm38019 Pseudogene Detail

Summary

• Symbol
  Gm38019
• Name
  predicted gene, 38019

• Feature Type
  pseudogene
• IDs
  MGI:5611247
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:139966171-139976767 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  238 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611247	pseudogene	Chr1:139966171-139976767 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195017842	pseudogene	Chr1:136723068-136728558 (-)
AKR/J	ENSMUSG00220003836	pseudogene	Chr1:136512387-136522983 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175006831	pseudogene	Chr1:136938248-136943737 (-)
C57BL/6NJ	ENSMUSG00215021445	pseudogene	Chr1:136898199-136908798 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210014684	pseudogene	Chr1:136886449-136891938 (-)
DBA/2J	ENSMUSG00185034286	pseudogene	Chr1:141223869-141229358 (-)
FVB/NJ	ENSMUSG00205002705	pseudogene	Chr1:136123932-136129421 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230040507	pseudogene	Chr1:140730192-140740788 (-)
NOD/ShiLtJ	ENSMUSG00190003105	pseudogene	Chr1:136698920-136709524 (-)
NZO/HlLtJ	ENSMUSG00225000100	pseudogene	Chr1:144504784-144515381 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm38019
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm38019
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000103691 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103691	Ensembl Gene Model | MGI Sequence Detail	10597	C57BL/6J
transcript	ENSMUST00000195133	Ensembl | MGI Sequence Detail	380	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22