Gm38002 Pseudogene Detail

Summary

• Symbol
  Gm38002
• Name
  predicted gene, 38002

• Feature Type
  pseudogene
• IDs
  MGI:5611230
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:25238964-25239143 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611230	pseudogene	Chr3:25238964-25239143 (-)
129S1/SvImJ	ENSMUSG00200024406	pseudogene	Chr3:21956817-21956996 (-)
A/J	ENSMUSG00195021480	pseudogene	Chr3:22094757-22094936 (-)
AKR/J	ENSMUSG00220008711	pseudogene	Chr3:22091710-22091889 (-)
BALB/cJ	ENSMUSG00180033764	pseudogene	Chr3:22070929-22071108 (-)
C3H/HeJ	ENSMUSG00175027977	pseudogene	Chr3:22087614-22087793 (-)
C57BL/6NJ	ENSMUSG00215019224	pseudogene	Chr3:22328343-22328522 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009949	pseudogene	Chr14:47028358-47028537 (+)
CAST/EiJ	ENSTCUG00005026598	pseudogene	Chr3:21903667-21903846 (-)
CBA/J	ENSMUSG00210037260	pseudogene	Chr3:22067702-22067881 (-)
DBA/2J	ENSMUSG00185009576	pseudogene	Chr3:22310974-22311153 (-)
FVB/NJ	ENSMUSG00205009151	pseudogene	Chr3:21608994-21609173 (-)
JF1/MsJ	ENSUMUG00000005721	pseudogene	Chr3:21817982-21818161 (-)
LP/J	ENSMUSG00230002095	pseudogene	Chr3:24186484-24186663 (-)
NOD/ShiLtJ	ENSMUSG00190037150	pseudogene	Chr3:22326450-22326629 (-)
NZO/HlLtJ	ENSMUSG00225007438	pseudogene	Chr3:26824055-26824234 (-)
PWK/PhJ	ENSLUMG00010037323	pseudogene	Chr3:21791153-21791332 (-)
SPRET/EiJ	ENSMSPG00010026062	pseudogene	Chr3:22168147-22168326 (-)
WSB/EiJ	ENSIUOG00005036549	pseudogene	Chr3:22335207-22335386 (-)

Homology

• Gene Tree
  Gm38002
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38002
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102855 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102855	Ensembl Gene Model | MGI Sequence Detail	180	C57BL/6J
transcript	ENSMUST00000193255	Ensembl | MGI Sequence Detail	180	Not Applicable

References

• Summaries
  All 4

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426