Gm37933 Gene Detail

Summary

• Symbol
  Gm37933
• Name
  predicted gene, 37933

• Feature Type
  lncRNA gene
• IDs
  MGI:5611161
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:86049981-86052855 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611161	lncRNA gene	Chr3:86049981-86052855 (+)
129S1/SvImJ	ENSMUSG00200040227	lncRNA gene	Chr3:82885685-82888457 (+)
A/J	ENSMUSG00195053824	lncRNA gene	Chr3:82910988-82913760 (+)
AKR/J	ENSMUSG00220052430	lncRNA gene	Chr3:82857453-82860248 (+)
BALB/cJ	ENSMUSG00180050198	lncRNA gene	Chr3:83027035-83029834 (+)
C3H/HeJ	ENSMUSG00175049551	lncRNA gene	Chr3:82837763-82840535 (+)
C57BL/6NJ	ENSMUSG00215050134	lncRNA gene	Chr3:83292051-83294839 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005667	lincRNA gene	Chr3:78910969-78913696 (+)
CAST/EiJ	ENSTCUG00005001980	lncRNA gene	Chr3:82381646-82384458 (+)
CBA/J	ENSMUSG00210049011	lncRNA gene	Chr3:82982000-82984772 (+)
DBA/2J	ENSMUSG00185053731	lncRNA gene	Chr3:83115905-83118700 (+)
FVB/NJ	ENSMUSG00205006544	lncRNA gene	Chr3:81914705-81917493 (+)
JF1/MsJ	ENSUMUG00000054908	lncRNA gene	Chr3:82682044-82684872 (+)
LP/J	ENSMUSG00230037019	lncRNA gene	Chr3:85106074-85108846 (+)
NOD/ShiLtJ	ENSMUSG00190051442	lncRNA gene	Chr3:83374284-83377072 (+)
NZO/HlLtJ	ENSMUSG00225008039	lncRNA gene	Chr3:87842183-87844971 (+)
PWK/PhJ	ENSLUMG00010052948	lncRNA gene	Chr3:82778937-82781777 (+)
SPRET/EiJ	ENSMSPG00010050841	lncRNA gene	Chr3:83588116-83590943 (+)
WSB/EiJ	ENSIUOG00005050440	lncRNA gene	Chr3:83361340-83364133 (+)

Homology

• Gene Tree
  Gm37933
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm37933
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103408 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103408	Ensembl Gene Model | MGI Sequence Detail	2875	C57BL/6J
transcript	ENSMUST00000193964	Ensembl | MGI Sequence Detail	1067	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm37933:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29780	Chr3:86050375-86050401 (+)	407 bp
Tssr29781	Chr3:86050438-86050466 (+)	471 bp