Gm37350 Gene Detail

Summary

• Symbol
  Gm37350
• Name
  predicted gene, 37350

• Feature Type
  lncRNA gene
• IDs
  MGI:5610578
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:5878473-5950563 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2333 from dbSNP Build 142
• Strain Annotations
  51

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610578	lncRNA gene	Chr3:5878473-5950563 (-)
129S1/SvImJ	ENSMUSG00200014986	lncRNA gene	Chr13:19512170-19516856 (+)
129S1/SvImJ	ENSMUSG00200001083	lncRNA gene	Chr3:3086034-3090720 (+)
129S1/SvImJ	ENSMUSG00200001034	lncRNA gene	Chr3:2625479-2630150 (-)
A/J	ENSMUSG00195001228	lncRNA gene	Chr3:2955531-2960195 (-)
AKR/J	ENSMUSG00220017159	lncRNA gene	Chr3:2929948-2934614 (-)
BALB/cJ	ENSMUSG00180007445	lncRNA gene	Chr3:2953370-2958036 (-)
C3H/HeJ	ENSMUSG00175005145	lncRNA gene	Chr3:2965394-2970060 (-)
C57BL/6NJ	ENSMUSG00215046386	lncRNA gene	Chr7:1109194-1113871 (+)
C57BL/6NJ	ENSMUSG00215005296	lncRNA gene	Chr3:2939767-2944438 (-)
C57BL/6NJ	ENSMUSG00215005832	lncRNA gene	Chr3:3401270-3405956 (+)
C57BL/6NJ	ENSMUSG00215033497	lncRNA gene	Chr8:12391489-12396163 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000365	lncRNA gene	Chr3:3018280-3022918 (-)
CBA/J	ENSMUSG00210000885	lncRNA gene	Chr3:2945724-2950390 (-)
DBA/2J	ENSMUSG00185009494	lncRNA gene	Chr14:72689871-72694548 (+)
DBA/2J	ENSMUSG00185007366	lncRNA gene	Chr8:12487056-12491730 (-)
DBA/2J	ENSMUSG00185000602	lncRNA gene	Chr3:3396671-3401359 (+)
DBA/2J	ENSMUSG00185000555	lncRNA gene	Chr3:2943047-2947718 (-)
DBA/2J	ENSMUSG00185015131	lncRNA gene	Chr13:19755282-19759968 (+)
FVB/NJ	ENSMUSG00205047235	lncRNA gene	Chr13:59103373-59108049 (+)
FVB/NJ	ENSMUSG00205006151	lncRNA gene	Chr3:2766902-2771573 (-)
FVB/NJ	ENSMUSG00205006237	lncRNA gene	Chr3:3206897-3211582 (+)
FVB/NJ	ENSMUSG00205037720	lncRNA gene	Chr8:12377846-12382520 (-)
FVB/NJ	ENSMUSG00205053177	lncRNA gene	Chr13:18904816-18909502 (+)
JF1/MsJ	ENSUMUG00000010494	lncRNA gene	Chr3:2922272-2926880 (-)
LP/J	ENSMUSG00230008199	lncRNA gene	Chr13:13645116-13649794 (+)
LP/J	ENSMUSG00230004193	lncRNA gene	Chr14:109864758-109869428 (-)
LP/J	ENSMUSG00230000100	lncRNA gene	Chr3:4865540-4870211 (-)
LP/J	ENSMUSG00230037293	lncRNA gene	Chr13:29160041-29164711 (+)
LP/J	ENSMUSG00230000272	lncRNA gene	Chr3:5326085-5330771 (+)
NOD/ShiLtJ	ENSMUSG00190023494	lncRNA gene	Chr3:2948880-2953551 (-)
NOD/ShiLtJ	ENSMUSG00190024060	lncRNA gene	Chr3:3388847-3393532 (+)
NOD/ShiLtJ	ENSMUSG00190042631	lncRNA gene	Chr8:12484652-12489326 (-)
NOD/ShiLtJ	ENSMUSG00190014562	lncRNA gene	Chr13:3602982-3607660 (+)
NOD/ShiLtJ	ENSMUSG00190026510	lncRNA gene	Chr13:18941427-18946113 (+)
NZO/HlLtJ	ENSMUSG00225035152	lncRNA gene	Chr13:7550469-7555147 (+)
NZO/HlLtJ	ENSMUSG00225001498	lncRNA gene	Chr3:7404550-7409221 (-)
NZO/HlLtJ	ENSMUSG00225043701	lncRNA gene	ChrX:148382082-148386950 (-)
NZO/HlLtJ	ENSMUSG00225028814	lncRNA gene	Chr5:55205113-55210005 (-)
NZO/HlLtJ	ENSMUSG00225001716	lncRNA gene	Chr3:7865140-7869826 (+)
PWK/PhJ	ENSLUMG00010052282	lncRNA gene	Chr7:887010-891685 (-)
PWK/PhJ	ENSLUMG00010014926	lncRNA gene	Chr13:71302682-71307360 (-)
PWK/PhJ	ENSLUMG00010053146	lncRNA gene	Chr2:21457141-21461818 (+)
PWK/PhJ	ENSLUMG00010015000	lncRNA gene	Chr3:66124018-66128681 (-)
PWK/PhJ	ENSLUMG00010050921	lncRNA gene	Chr16:14656981-14661877 (+)
PWK/PhJ	ENSLUMG00010045975	lncRNA gene	ChrX:121018768-121023440 (-)
PWK/PhJ	ENSLUMG00010034838	lncRNA gene	Chr13:18389248-18393930 (+)
PWK/PhJ	ENSLUMG00010013948	lncRNA gene	Chr7:104240644-104245282 (-)
PWK/PhJ	ENSLUMG00010038451	lncRNA gene	Chr3:30520836-30525724 (-)
SPRET/EiJ	ENSMSPG00010000174	lncRNA gene	Chr3:2815792-2820191 (-)
WSB/EiJ	ENSIUOG00005000821	lncRNA gene	Chr3:3016244-3020891 (-)

Homology

• Gene Tree
  Gm37350
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54

• Ensembl
  ENSMUSG00000102979 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102979	Ensembl Gene Model | MGI Sequence Detail	72091	C57BL/6J
transcript	ENSMUST00000267451	Ensembl | MGI Sequence Detail	1010	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm37350:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr813	Chr3:5925756-5925786 (-)	24,792 bp