Gm37305 Gene Detail

Summary

• Symbol
  Gm37305
• Name
  predicted gene, 37305

• Feature Type
  lncRNA gene
• IDs
  MGI:5610533
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:65865179-65869457 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610533	lncRNA gene	Chr3:65865179-65869457 (+)
129S1/SvImJ	ENSMUSG00200001818	lncRNA gene	Chr3:62617849-62622127 (+)
A/J	ENSMUSG00195026614	lncRNA gene	Chr3:62731077-62735355 (+)
AKR/J	ENSMUSG00220025212	lncRNA gene	Chr3:62743544-62747822 (+)
BALB/cJ	ENSMUSG00180008645	lncRNA gene	Chr3:62761980-62766258 (+)
C3H/HeJ	ENSMUSG00175003543	lncRNA gene	Chr3:62623322-62627600 (+)
C57BL/6NJ	ENSMUSG00215006519	lncRNA gene	Chr3:63091788-63096066 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003376	antisense lncRNA gene	Chr3:59593553-59597810 (+)
CAST/EiJ	ENSTCUG00005002416	lncRNA gene	Chr3:62334389-62338900 (+)
CBA/J	ENSMUSG00210002309	lncRNA gene	Chr3:62709671-62713949 (+)
DBA/2J	ENSMUSG00185015473	lncRNA gene	Chr3:62878428-62882706 (+)
FVB/NJ	ENSMUSG00205004009	lncRNA gene	Chr3:61879886-61884165 (+)
JF1/MsJ	ENSUMUG00000001382	lncRNA gene	Chr3:62539961-62544454 (+)
LP/J	ENSMUSG00230002731	lncRNA gene	Chr3:64902393-64906671 (+)
NOD/ShiLtJ	ENSMUSG00190003223	lncRNA gene	Chr3:63197149-63201428 (+)
NZO/HlLtJ	ENSMUSG00225002747	lncRNA gene	Chr3:67620153-67624431 (+)
PWK/PhJ	ENSLUMG00010015078	lncRNA gene	Chr3:62596654-62601145 (+)
SPRET/EiJ	ENSMSPG00010008064	lncRNA gene	Chr3:63068161-63072461 (+)
WSB/EiJ	ENSIUOG00005016577	lncRNA gene	Chr3:63133110-63137388 (+)

Homology

• Gene Tree
  Gm37305
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm37305
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000103041 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103041	Ensembl Gene Model | MGI Sequence Detail	4279	C57BL/6J
transcript	ENSMUST00000195714	Ensembl | MGI Sequence Detail	4279	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm37305:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29416	Chr3:65864909-65864958 (+)	-245 bp
Tssr29417	Chr3:65865728-65865756 (+)	563 bp
Tssr29418	Chr3:65865830-65865844 (+)	658 bp
Tssr29419	Chr3:65866130-65866142 (+)	957 bp