Gm37108 Pseudogene Detail

Summary

• Symbol
  Gm37108
• Name
  predicted gene, 37108

• Feature Type
  pseudogene
• IDs
  MGI:5610336
  NCBI Gene: 102641523
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:6986783-6993812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610336	pseudogene	Chr1:6986750-6993866 (+)
129S1/SvImJ	ENSMUSG00200003380	pseudogene	Chr1:4377109-4384139 (+)
A/J	ENSMUSG00195003300	pseudogene	Chr1:4196695-4203724 (+)
AKR/J	ENSMUSG00220003913	pseudogene	Chr1:4254865-4261895 (+)
BALB/cJ	ENSMUSG00180009281	pseudogene	Chr1:4274012-4281041 (+)
C3H/HeJ	ENSMUSG00175000362	pseudogene	Chr1:4140037-4147065 (+)
C57BL/6NJ	ENSMUSG00215004413	pseudogene	Chr1:4177537-4184566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002270	pseudogene	Chr1:4548214-4555043 (+)
CBA/J	ENSMUSG00210002203	pseudogene	Chr1:4055062-4062090 (+)
DBA/2J	ENSMUSG00185004708	pseudogene	Chr1:5069136-5076164 (+)
FVB/NJ	ENSMUSG00205005357	pseudogene	Chr1:4339105-4346134 (+)
JF1/MsJ	ENSUMUG00000050322	pseudogene	Chr1:57242098-57242724 (+)
JF1/MsJ	ENSUMUG00000006241	pseudogene	Chr3:136555021-136555664 (+)
JF1/MsJ	ENSUMUG00000004176	pseudogene	Chr1:4336111-4343135 (+)
LP/J	ENSMUSG00230002476	pseudogene	Chr1:5084181-5091210 (+)
NOD/ShiLtJ	ENSMUSG00190001379	pseudogene	Chr1:4201543-4208572 (+)
NZO/HlLtJ	ENSMUSG00225000212	pseudogene	Chr1:8471273-8478302 (+)
PWK/PhJ	ENSLUMG00010002693	pseudogene	Chr1:3915430-3927962 (+)
PWK/PhJ	ENSLUMG00010004742	pseudogene	Chr2:49628719-49629345 (-)
PWK/PhJ	ENSLUMG00010001608	pseudogene	Chr5:43440781-43441408 (-)
PWK/PhJ	ENSLUMG00010027134	pseudogene	Chr1:56752679-56753305 (+)
SPRET/EiJ	ENSMSPG00010014553	pseudogene	Chr1:4563434-4567546 (+)
WSB/EiJ	ENSIUOG00005011331	pseudogene	Chr1:4160638-4167468 (+)

Homology

• Gene Tree
  Gm37108
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000102135 (Evidence)
• NCBI Gene
  102641523

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102135	Ensembl Gene Model | MGI Sequence Detail	7030	C57BL/6J
transcript	ENSMUST00000194605	Ensembl | MGI Sequence Detail	626	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37108:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5877	Chr1:6986758-6986760 (+)	-24 bp