Gm36953 Pseudogene Detail

Summary

• Symbol
  Gm36953
• Name
  predicted gene, 36953

• Feature Type
  pseudogene
• IDs
  MGI:5610181
  NCBI Gene: 118568640
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:93407122-93407607 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610181	pseudogene	Chr3:93407091-93407784 (-)
129S1/SvImJ	ENSMUSG00200039931	pseudogene	Chr3:90223351-90223839 (-)
A/J	ENSMUSG00195053476	pseudogene	Chr3:90222837-90223324 (-)
AKR/J	ENSMUSG00220051250	pseudogene	Chr3:89438620-89439107 (-)
BALB/cJ	ENSMUSG00180050382	pseudogene	Chr3:90369016-90369500 (-)
C3H/HeJ	ENSMUSG00175049412	pseudogene	Chr3:90165877-90166364 (-)
C57BL/6NJ	ENSMUSG00215050194	pseudogene	Chr3:90750911-90751396 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010963	pseudogene	Chr3:87670328-87670591 (-)
CAST/EiJ	ENSTCUG00005048165	pseudogene	Chr3:90529268-90529747 (-)
CBA/J	ENSMUSG00210048615	pseudogene	Chr3:90272710-90273197 (-)
DBA/2J	ENSMUSG00185053440	pseudogene	Chr3:90478689-90479176 (-)
FVB/NJ	ENSMUSG00205051570	pseudogene	Chr3:89563127-89563614 (-)
JF1/MsJ	ENSUMUG00000053679	pseudogene	Chr3:90050104-90050585 (-)
LP/J	ENSMUSG00230046616	pseudogene	Chr3:92520293-92520780 (-)
NOD/ShiLtJ	ENSMUSG00190050319	pseudogene	Chr3:90631946-90632404 (-)
NZO/HlLtJ	ENSMUSG00225012870	pseudogene	Chr3:95333565-95334049 (-)
PWK/PhJ	ENSLUMG00010052500	pseudogene	Chr3:90079261-90079731 (-)
SPRET/EiJ	ENSMSPG00010050656	pseudogene	Chr3:90569612-90570132 (-)
WSB/EiJ	ENSIUOG00005050635	pseudogene	Chr3:90783608-90784095 (-)

Homology

• Gene Tree
  Gm36953
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm36953
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104135 (Evidence)
• NCBI Gene
  118568640

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104135	Ensembl Gene Model | MGI Sequence Detail	486	C57BL/6J
transcript	ENSMUST00000195295	Ensembl | MGI Sequence Detail	268	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm36953:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34375	Chr3:93407629-93407641 (-)	-28 bp