Gm36914 Gene Detail

Summary

• Symbol
  Gm36914
• Name
  predicted gene, 36914

• Feature Type
  lncRNA gene
• IDs
  MGI:5596073
  NCBI Gene: 102640981
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:32937510-32953023 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  510 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596073	lncRNA gene	Chr19:32917406-33080870 (+)
129S1/SvImJ	ENSMUSG00200020752	lncRNA gene	Chr19:29658375-29697470 (+)
A/J	ENSMUSG00195036607	lncRNA gene	Chr19:29824808-29863753 (+)
AKR/J	ENSMUSG00220019714	lncRNA gene	Chr19:29883941-29923028 (+)
BALB/cJ	ENSMUSG00180013787	lncRNA gene	Chr19:30153745-30192680 (+)
C3H/HeJ	ENSMUSG00175025361	lncRNA gene	Chr19:29542329-29581406 (+)
C57BL/6NJ	ENSMUSG00215026961	lncRNA gene	Chr19:29576835-29615926 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018346	lncRNA gene	Chr19:29391254-29430763 (+)
CBA/J	ENSMUSG00210014968	lncRNA gene	Chr19:29785746-29824804 (+)
DBA/2J	ENSMUSG00185026058	lncRNA gene	Chr19:30157783-30196855 (+)
FVB/NJ	ENSMUSG00205012924	lncRNA gene	Chr19:29553709-29592816 (+)
JF1/MsJ	ENSUMUG00000039230	lncRNA gene	Chr19:30408453-30447827 (+)
LP/J	ENSMUSG00230035627	lncRNA gene	Chr19:30944670-30983753 (+)
NOD/ShiLtJ	ENSMUSG00190022877	lncRNA gene	Chr19:29526829-29566031 (+)
NZO/HlLtJ	ENSMUSG00225029854	lncRNA gene	Chr19:34720460-34759721 (+)
PWK/PhJ	ENSLUMG00010034582	lncRNA gene	Chr19:29779402-29818851 (+)
SPRET/EiJ	ENSMSPG00010037520	lncRNA gene	Chr19:29754608-29793550 (+)
WSB/EiJ	ENSIUOG00005029155	lncRNA gene	Chr19:29238495-29277759 (+)

Homology

• Gene Tree
  Gm36914
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  112
• RefSeq
  2

• Ensembl
  ENSMUSG00000120097 (Evidence)
• NCBI Gene
  102640981

Representative Sequences			Length	Strain/Species
genomic	102640981	NCBI Gene Model | MGI Sequence Detail	15514	C57BL/6J
transcript	XR_877816	RefSeq | MGI Sequence Detail	405	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm36914:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156008	Chr19:32937530-32937571 (+)	41 bp
Tssr156009	Chr19:32952947-32952951 (+)	15,439 bp