Gm36913 Gene Detail

Summary

• Symbol
  Gm36913
• Name
  predicted gene, 36913

• Feature Type
  lncRNA gene
• IDs
  MGI:5596072
  NCBI Gene: 102640980
• Alliance
  genome feature page
• Transcription Start Sites
  26 TSS

Location &
Maps

• Sequence Map
  Chr19:9901914-9959884 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1622 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596072	lncRNA gene	Chr19:9901913-9960404 (-)
129S1/SvImJ	ENSMUSG00200053227	lncRNA gene	Chr19:6579611-6583577 (-)
A/J	ENSMUSG00195053371	lncRNA gene	Chr19:6789332-6793392 (-)
AKR/J	ENSMUSG00220051892	lncRNA gene	Chr19:6700134-6704104 (-)
BALB/cJ	ENSMUSG00180052278	lncRNA gene	Chr19:7153305-7157365 (-)
C3H/HeJ	ENSMUSG00175015145	lncRNA gene	Chr19:6427005-6431065 (-)
C57BL/6NJ	ENSMUSG00215047367	lncRNA gene	Chr19:6496930-6500900 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043814	lncRNA gene	Chr19:6288017-6292084 (-)
CBA/J	ENSMUSG00210050902	lncRNA gene	Chr19:6627654-6631624 (-)
DBA/2J	ENSMUSG00185054034	lncRNA gene	Chr19:7037382-7041352 (-)
FVB/NJ	ENSMUSG00205053271	lncRNA gene	Chr19:6519300-6523270 (-)
JF1/MsJ	ENSUMUG00000056528	lncRNA gene	Chr19:7157813-7162012 (-)
LP/J	ENSMUSG00230054352	lncRNA gene	Chr19:7954329-7958295 (-)
NOD/ShiLtJ	ENSMUSG00190052794	lncRNA gene	Chr19:6252837-6256811 (-)
NZO/HlLtJ	ENSMUSG00225046747	lncRNA gene	Chr19:11663168-11667134 (-)
PWK/PhJ	ENSLUMG00010008634	lncRNA gene	Chr19:6543395-6547363 (-)
SPRET/EiJ	ENSMSPG00010050734	lncRNA gene	Chr19:6391095-6395059 (-)
WSB/EiJ	ENSIUOG00005051260	lncRNA gene	Chr19:6145197-6149172 (-)

Homology

• Gene Tree
  Gm36913
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  4

• Ensembl
  ENSMUSG00000118008 (Evidence)
• NCBI Gene
  102640980

Representative Sequences			Length	Strain/Species
genomic	102640980	NCBI Gene Model | MGI Sequence Detail	57971	C57BL/6J
transcript	NR_176648	RefSeq | MGI Sequence Detail	1567	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm36913:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158138	Chr19:9961629-9961690 (-)	-1,776 bp
Tssr158137	Chr19:9961583-9961601 (-)	-1,708 bp
Tssr158136	Chr19:9960255-9960304 (-)	-396 bp
Tssr158135	Chr19:9959910-9959931 (-)	-37 bp
Tssr158134	Chr19:9959876-9959895 (-)	-2 bp
Tssr158133	Chr19:9959848-9959870 (-)	25 bp
Tssr158132	Chr19:9959805-9959813 (-)	75 bp
Tssr158131	Chr19:9959789-9959799 (-)	90 bp
Tssr158130	Chr19:9955825-9955866 (-)	4,038 bp
Tssr158129	Chr19:9955788-9955795 (-)	4,092 bp
Tssr158128	Chr19:9955109-9955116 (-)	4,771 bp
Tssr158127	Chr19:9952226-9952232 (-)	7,655 bp
Tssr158126	Chr19:9941994-9942002 (-)	17,886 bp
Tssr158124	Chr19:9931868-9931890 (-)	28,005 bp
Tssr158123	Chr19:9931837-9931855 (-)	28,038 bp
Tssr158122	Chr19:9931562-9931586 (-)	28,310 bp
Tssr158121	Chr19:9925351-9925360 (-)	34,528 bp
Tssr158120	Chr19:9923256-9923267 (-)	36,622 bp
Tssr158119	Chr19:9923228-9923239 (-)	36,650 bp
Tssr158118	Chr19:9916198-9916213 (-)	43,678 bp
Tssr158117	Chr19:9916126-9916172 (-)	43,735 bp
Tssr158116	Chr19:9914067-9914095 (-)	45,803 bp
Tssr158115	Chr19:9908614-9908617 (-)	51,268 bp
Tssr158114	Chr19:9908537-9908553 (-)	51,339 bp
Tssr158113	Chr19:9908511-9908527 (-)	51,365 bp
Tssr158112	Chr19:9905728-9905749 (-)	54,145 bp