Gm36874 Gene Detail

Summary

• Symbol
  Gm36874
• Name
  predicted gene, 36874

• Feature Type
  lncRNA gene
• IDs
  MGI:5596033
  NCBI Gene: 102640927
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:62942158-62946167 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596033	lncRNA gene	Chr11:62937546-62947066 (+)
129S1/SvImJ	ENSMUSG00200037158	lncRNA gene	Chr11:59869825-59873831 (+)
A/J	ENSMUSG00195043543	lncRNA gene	Chr11:59908624-59913320 (+)
AKR/J	ENSMUSG00220050075	lncRNA gene	Chr11:60012521-60017217 (+)
BALB/cJ	ENSMUSG00180050621	lncRNA gene	Chr11:59956119-59960125 (+)
C3H/HeJ	ENSMUSG00175048956	lncRNA gene	Chr11:59925386-59930082 (+)
C57BL/6NJ	ENSMUSG00215040596	lncRNA gene	Chr11:59705168-59709174 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047379	lncRNA gene	Chr11:59473380-59477386 (+)
CBA/J	ENSMUSG00210041898	lncRNA gene	Chr11:59758797-59763493 (+)
DBA/2J	ENSMUSG00185045225	lncRNA gene	Chr11:59950704-59954710 (+)
FVB/NJ	ENSMUSG00205051492	lncRNA gene	Chr11:59829414-59833420 (+)
JF1/MsJ	ENSUMUG00000049994	lncRNA gene	Chr11:60372451-60376455 (+)
LP/J	ENSMUSG00230053997	lncRNA gene	Chr11:61090978-61094984 (+)
NOD/ShiLtJ	ENSMUSG00190051523	lncRNA gene	Chr11:59946375-59950381 (+)
NZO/HlLtJ	ENSMUSG00225047931	lncRNA gene	Chr11:63237344-63242040 (+)
PWK/PhJ	ENSLUMG00010037582	lncRNA gene	Chr11:59881258-59885262 (+)
SPRET/EiJ	ENSMSPG00010043943	lncRNA gene	Chr11:60565053-60569046 (+)
WSB/EiJ	ENSIUOG00005039260	lncRNA gene	Chr11:59860538-59865234 (+)

Homology

• Gene Tree
  Gm36874
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm36874
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120650 (Evidence)
• NCBI Gene
  102640927

Representative Sequences			Length	Strain/Species
genomic	102640927	NCBI Gene Model | MGI Sequence Detail	4010	C57BL/6J
transcript	NR_168671	RefSeq | MGI Sequence Detail	354	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm36874:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102078	Chr11:62942152-62942167 (+)	2 bp