Gm36860 Gene Detail

Summary

• Symbol
  Gm36860
• Name
  predicted gene, 36860

• Feature Type
  lncRNA gene
• IDs
  MGI:5596019
  NCBI Gene: 102640908
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:32943466-32957746 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  500 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596019	lncRNA gene	Chr19:32943466-32957815 (-)
129S1/SvImJ	ENSMUSG00200021225	lncRNA gene	Chr19:29673244-29678317 (-)
A/J	ENSMUSG00195036229	lncRNA gene	Chr19:29839674-29844735 (-)
AKR/J	ENSMUSG00220020291	lncRNA gene	Chr19:29898807-29903882 (-)
BALB/cJ	ENSMUSG00180013983	lncRNA gene	Chr19:30168607-30173668 (-)
C3H/HeJ	ENSMUSG00175025785	lncRNA gene	Chr19:29557198-29562250 (-)
C57BL/6NJ	ENSMUSG00215027583	lncRNA gene	Chr19:29591697-29596771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018684	lncRNA gene	Chr19:29406271-29411605 (-)
CBA/J	ENSMUSG00210015099	lncRNA gene	Chr19:29800603-29805655 (-)
DBA/2J	ENSMUSG00185026777	lncRNA gene	Chr19:30172652-30177704 (-)
FVB/NJ	ENSMUSG00205013871	lncRNA gene	Chr19:29568553-29573629 (-)
JF1/MsJ	ENSUMUG00000039946	lncRNA gene	Chr19:30423545-30428635 (-)
LP/J	ENSMUSG00230035722	lncRNA gene	Chr19:30959530-30964603 (-)
NOD/ShiLtJ	ENSMUSG00190022261	lncRNA gene	Chr19:29541855-29546933 (-)
NZO/HlLtJ	ENSMUSG00225029890	lncRNA gene	Chr19:34735481-34740559 (-)
PWK/PhJ	ENSLUMG00010035165	lncRNA gene	Chr19:29794671-29799766 (-)
SPRET/EiJ	ENSMSPG00010039354	lncRNA gene	Chr19:29769490-29774578 (-)
WSB/EiJ	ENSIUOG00005029135	lncRNA gene	Chr19:29253514-29258593 (-)

Homology

• Gene Tree
  Gm36860
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000117664 (Evidence)
• NCBI Gene
  102640908

Representative Sequences			Length	Strain/Species
genomic	102640908	NCBI Gene Model | MGI Sequence Detail	14281	C57BL/6J
transcript	XR_877814	RefSeq | MGI Sequence Detail	4835	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm36860:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158907	Chr19:32957684-32957705 (-)	51 bp
Tssr158906	Chr19:32957662-32957680 (-)	75 bp
Tssr158905	Chr19:32957639-32957650 (-)	101 bp