Gm36858 Pseudogene Detail

Summary

• Symbol
  Gm36858
• Name
  predicted gene, 36858

• Feature Type
  pseudogene
• IDs
  MGI:5596017
  NCBI Gene: 102640904
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:37113110-37122628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596017	pseudogene	Chr18:37109347-37123325 (+)
129S1/SvImJ	ENSMUSG00200045015	pseudogene	Chr18:34118946-34128458 (+)
A/J	ENSMUSG00195039111	pseudogene	Chr18:34271927-34281445 (+)
AKR/J	ENSMUSG00220017405	pseudogene	Chr18:34262087-34271599 (+)
BALB/cJ	ENSMUSG00180022025	pseudogene	Chr18:34721576-34731094 (+)
C3H/HeJ	ENSMUSG00175043965	pseudogene	Chr18:34243581-34253099 (+)
C57BL/6NJ	ENSMUSG00215030811	pseudogene	Chr18:33982590-33992108 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024608	pseudogene	Chr18:33887048-33889438 (+)
CBA/J	ENSMUSG00210021730	pseudogene	Chr18:34263586-34273104 (+)
DBA/2J	ENSMUSG00185021132	pseudogene	Chr18:34198200-34207718 (+)
FVB/NJ	ENSMUSG00205036326	pseudogene	Chr18:33923887-33933399 (+)
JF1/MsJ	ENSUMUG00000047869	pseudogene	Chr18:34351875-34354265 (+)
LP/J	ENSMUSG00230048812	pseudogene	Chr18:36315633-36325145 (+)
NOD/ShiLtJ	ENSMUSG00190024026	pseudogene	Chr18:33991903-34001421 (+)
NZO/HlLtJ	ENSMUSG00225047513	pseudogene	Chr18:36213703-36223221 (+)
PWK/PhJ	ENSLUMG00010013564	pseudogene	Chr18:34514410-34516800 (+)
SPRET/EiJ	ENSMSPG00010024600	pseudogene	Chr18:34563809-34566199 (+)
WSB/EiJ	ENSIUOG00005008728	pseudogene	Chr18:33984495-33986885 (+)

Homology

• Gene Tree
  Gm36858
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm36858
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104240 (Evidence)
• NCBI Gene
  102640904

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104240	Ensembl Gene Model | MGI Sequence Detail	9519	C57BL/6J
transcript	ENSMUST00000194501	Ensembl | MGI Sequence Detail	2391	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)