Gm36823 Gene Detail

Summary

• Symbol
  Gm36823
• Name
  predicted gene, 36823
• Synonyms
  Gm43536

• Feature Type
  lncRNA gene
• IDs
  MGI:5595982
  NCBI Gene: 102640855
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:38481284-38498023 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  679 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595982	lncRNA gene	Chr3:38480701-38498023 (-)
129S1/SvImJ	ENSMUSG00200006304	lncRNA gene	Chr3:35223988-35241316 (-)
A/J	ENSMUSG00195001529	lncRNA gene	Chr3:35197422-35214778 (-)
AKR/J	ENSMUSG00220000683	lncRNA gene	Chr3:35281630-35298990 (-)
BALB/cJ	ENSMUSG00180002771	lncRNA gene	Chr3:35336124-35353451 (-)
C3H/HeJ	ENSMUSG00175003562	lncRNA gene	Chr3:35241394-35258750 (-)
C57BL/6NJ	ENSMUSG00215001569	lncRNA gene	Chr3:35610182-35627510 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005609	lincRNA gene	Chr3:33236364-33252548 (-)
CAST/EiJ	ENSTCUG00005001198	lncRNA gene	Chr3:35064822-35082062 (-)
CBA/J	ENSMUSG00210001701	lncRNA gene	Chr3:35295720-35313072 (-)
DBA/2J	ENSMUSG00185001767	lncRNA gene	Chr3:35497300-35514624 (-)
FVB/NJ	ENSMUSG00205000733	lncRNA gene	Chr3:34656170-34673500 (-)
JF1/MsJ	ENSUMUG00000001130	lncRNA gene	Chr3:35030000-35047326 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190002139	lncRNA gene	Chr3:35538248-35555607 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010000841	lncRNA gene	Chr3:35064322-35081682 (-)
SPRET/EiJ	ENSMSPG00010000728	lncRNA gene	Chr3:35479607-35497243 (-)
WSB/EiJ	ENSIUOG00005014729	lncRNA gene	Chr3:35519383-35536707 (-)

Homology

• Gene Tree
  Gm36823
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm36823
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000105516 (Evidence)
• NCBI Gene
  102640855

Representative Sequences			Length	Strain/Species
genomic	102640855	NCBI Gene Model | MGI Sequence Detail	16740	C57BL/6J
transcript	AK134652	GenBank | ENA | DDBJ | MGI Sequence Detail	1793	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663673

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:157707 Puligilla C, et al., Sox2 induces neuronal formation in the developing mammalian cochlea. J Neurosci. 2010 Jan 13;30(2):714-22