Gm36796 Pseudogene Detail

Summary

• Symbol
  Gm36796
• Name
  predicted gene, 36796

• Feature Type
  pseudogene
• IDs
  MGI:5595955
  NCBI Gene: 118568249
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:22062918-22063222 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595955	pseudogene	Chr16:22062849-22063235 (+)
129S1/SvImJ	ENSMUSG00200047486	pseudogene	Chr16:19062519-19062823 (+)
A/J	ENSMUSG00195036446	pseudogene	Chr16:18620856-18621160 (+)
AKR/J	ENSMUSG00220046394	pseudogene	Chr16:18940263-18940567 (+)
BALB/cJ	ENSMUSG00180041106	pseudogene	Chr16:18861453-18861757 (+)
C3H/HeJ	ENSMUSG00175050682	pseudogene	Chr16:19006392-19006696 (+)
C57BL/6NJ	ENSMUSG00215043206	pseudogene	Chr16:18733604-18733908 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046508	pseudogene	Chr16:19338236-19338540 (+)
CBA/J	ENSMUSG00210048645	pseudogene	Chr16:19028145-19028449 (+)
DBA/2J	ENSMUSG00185033701	pseudogene	Chr16:18966890-18967194 (+)
FVB/NJ	ENSMUSG00205048834	pseudogene	Chr16:18962759-18963063 (+)
JF1/MsJ	ENSUMUG00000055207	pseudogene	Chr16:19186567-19186870 (+)
LP/J	ENSMUSG00230033989	pseudogene	Chr16:21546042-21546346 (+)
NOD/ShiLtJ	ENSMUSG00190049552	pseudogene	Chr16:19108376-19108680 (+)
NZO/HlLtJ	ENSMUSG00225039176	pseudogene	Chr16:24797142-24797446 (+)
PWK/PhJ	ENSLUMG00010050058	pseudogene	Chr16:19014462-19014766 (+)
SPRET/EiJ	ENSMSPG00010047325	pseudogene	Chr16:18879907-18880211 (+)
WSB/EiJ	ENSIUOG00005045252	pseudogene	Chr16:19187053-19187357 (+)

Homology

• Gene Tree
  Gm36796
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116761 (Evidence)
• NCBI Gene
  118568249

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116761	Ensembl Gene Model | MGI Sequence Detail	305	C57BL/6J
transcript	ENSMUST00000232582	Ensembl | MGI Sequence Detail	305	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;