Gm36787 Gene Detail

Summary

• Symbol
  Gm36787
• Name
  predicted gene, 36787

• Feature Type
  lncRNA gene
• IDs
  MGI:5595946
  NCBI Gene: 102640806
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:3762844-3794436 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  779 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595946	lncRNA gene	Chr19:3762657-3794436 (-)
129S1/SvImJ	ENSMUSG00200052766	lncRNA gene	Chr19:523062-529591 (-)
A/J	ENSMUSG00195054150	lncRNA gene	Chr19:914319-920848 (-)
AKR/J	ENSMUSG00220050042	lncRNA gene	Chr19:687287-693816 (-)
BALB/cJ	ENSMUSG00180052412	lncRNA gene	Chr19:1289039-1295568 (-)
C3H/HeJ	ENSMUSG00175015700	lncRNA gene	Chr19:533835-540364 (-)
C57BL/6NJ	ENSMUSG00215046921	lncRNA gene	Chr19:761310-767839 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043115	lncRNA gene	Chr19:676507-682994 (-)
CBA/J	ENSMUSG00210050525	lncRNA gene	Chr19:534222-540751 (-)
DBA/2J	ENSMUSG00185053681	lncRNA gene	Chr19:910549-917078 (-)
FVB/NJ	ENSMUSG00205052528	lncRNA gene	Chr19:910117-916645 (-)
JF1/MsJ	ENSUMUG00000056154	lncRNA gene	Chr19:899062-905656 (-)
LP/J	ENSMUSG00230054234	lncRNA gene	Chr19:1829256-1835785 (-)
NOD/ShiLtJ	ENSMUSG00190052626	lncRNA gene	Chr19:455431-461960 (-)
NZO/HlLtJ	ENSMUSG00225027182	lncRNA gene	Chr19:5538096-5544625 (-)
PWK/PhJ	ENSLUMG00010008625	lncRNA gene	Chr19:669905-676678 (-)
SPRET/EiJ	ENSMSPG00010050408	lncRNA gene	Chr19:653256-659748 (-)
WSB/EiJ	ENSIUOG00005050849	lncRNA gene	Chr19:541323-547810 (-)

Homology

• Gene Tree
  Gm36787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000117739 (Evidence)
• NCBI Gene
  102640806

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117739	Ensembl Gene Model | MGI Sequence Detail	31593	C57BL/6J
transcript	ENSMUST00000265118	Ensembl | MGI Sequence Detail	1047	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm36787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157402	Chr19:3794374-3794392 (-)	53 bp