Gm36738 Gene Detail

Summary

• Symbol
  Gm36738
• Name
  predicted gene, 36738

• Feature Type
  lncRNA gene
• IDs
  MGI:5595897
  NCBI Gene: 102640742
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:78458611-78465789 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595897	lncRNA gene	Chr15:78458607-78465916 (-)
129S1/SvImJ	ENSMUSG00200054083	lncRNA gene	Chr15:75568735-75575933 (-)
A/J	ENSMUSG00195052034	lncRNA gene	Chr15:75511069-75518268 (-)
AKR/J	ENSMUSG00220053109	lncRNA gene	Chr15:75554524-75561725 (-)
BALB/cJ	ENSMUSG00180053584	lncRNA gene	Chr15:75388115-75395317 (-)
C3H/HeJ	ENSMUSG00175053086	lncRNA gene	Chr15:75699442-75706639 (-)
C57BL/6NJ	ENSMUSG00215052706	lncRNA gene	Chr15:75468860-75476127 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048078	lncRNA gene	Chr15:75015041-75022279 (-)
CBA/J	ENSMUSG00210049780	lncRNA gene	Chr15:75474650-75481848 (-)
DBA/2J	ENSMUSG00185051763	lncRNA gene	Chr15:75484457-75491657 (-)
FVB/NJ	ENSMUSG00205051827	lncRNA gene	Chr15:75204261-75211456 (-)
JF1/MsJ	ENSUMUG00000056866	lncRNA gene	Chr15:75063176-75070347 (-)
LP/J	ENSMUSG00230052644	lncRNA gene	Chr15:78817209-78824407 (-)
NOD/ShiLtJ	ENSMUSG00190053631	lncRNA gene	Chr15:75497351-75504507 (-)
NZO/HlLtJ	ENSMUSG00225053863	lncRNA gene	Chr15:79148255-79155451 (-)
PWK/PhJ	ENSLUMG00010052460	lncRNA gene	Chr15:75285930-75293125 (-)
SPRET/EiJ	ENSMSPG00010050752	lncRNA gene	Chr15:76946593-76953794 (-)
WSB/EiJ	ENSIUOG00005049645	lncRNA gene	Chr15:75550527-75557711 (-)

Homology

• Gene Tree
  Gm36738
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  18
• Chemically induced (other)
  1
• Gene trapped
  17
• Genomic Mutations
  1 involving Gm36738
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000116097 (Evidence)
• NCBI Gene
  102640742

Representative Sequences			Length	Strain/Species
genomic	102640742	NCBI Gene Model | MGI Sequence Detail	7179	C57BL/6J
transcript	NR_155437	RefSeq | MGI Sequence Detail	367	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm36738:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135257	Chr15:78465763-78465821 (-)	-3 bp