Gm36642 Gene Detail

Summary

• Symbol
  Gm36642
• Name
  predicted gene, 36642

• Feature Type
  lncRNA gene
• IDs
  MGI:5595801
  NCBI Gene: 102640623
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:25588652-25591127 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595801	lncRNA gene	Chr15:25528965-25602553 (-)
129S1/SvImJ	ENSMUSG00200028320	lncRNA gene	Chr15:22540750-22602776 (-)
A/J	ENSMUSG00195014447	lncRNA gene	Chr15:22485589-22549738 (-)
AKR/J	ENSMUSG00220047558	lncRNA gene	Chr15:22336749-22400952 (-)
BALB/cJ	ENSMUSG00180005519	lncRNA gene	Chr15:22420597-22484678 (-)
C3H/HeJ	ENSMUSG00175004765	lncRNA gene	Chr15:22555345-22619425 (-)
C57BL/6NJ	ENSMUSG00215005731	lncRNA gene	Chr15:22476540-22540760 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015333	lncRNA gene	Chr15:22533969-22596869 (-)
CBA/J	ENSMUSG00210024535	lncRNA gene	Chr15:22531318-22593338 (-)
DBA/2J	ENSMUSG00185023648	lncRNA gene	Chr15:22523891-22585910 (-)
FVB/NJ	ENSMUSG00205014316	lncRNA gene	Chr15:22445839-22509977 (-)
JF1/MsJ	ENSUMUG00000014810	lncRNA gene	Chr15:22521639-22585731 (-)
LP/J	ENSMUSG00230015975	lncRNA gene	Chr15:26010504-26072509 (-)
NOD/ShiLtJ	ENSMUSG00190012703	lncRNA gene	Chr15:22494270-22558489 (-)
NZO/HlLtJ	ENSMUSG00225032001	lncRNA gene	Chr15:26236898-26300980 (-)
PWK/PhJ	ENSLUMG00010022241	lncRNA gene	Chr15:22633023-22696999 (-)
SPRET/EiJ	ENSMSPG00010024533	lncRNA gene	Chr15:23053741-23123883 (-)
WSB/EiJ	ENSIUOG00005021479	lncRNA gene	Chr15:22537095-22599076 (-)

Homology

• Gene Tree
  Gm36642
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000115204 (Evidence)
• NCBI Gene
  102640623

Representative Sequences			Length	Strain/Species
genomic	102640623	NCBI Gene Model | MGI Sequence Detail	2476	C57BL/6J
transcript	AK086666	GenBank | ENA | DDBJ | MGI Sequence Detail	1680	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;