Gm36627 Pseudogene Detail

Summary

• Symbol
  Gm36627
• Name
  predicted gene, 36627

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5595786
  NCBI Gene: 102640601
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:80059500-80059745 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595786	pseudogene	Chr18:80059489-80059745 (+)
129S1/SvImJ	ENSMUSG00200029225	pseudogene	Chr18:77283303-77283548 (+)
A/J	ENSMUSG00195005254	pseudogene	Chr18:77367230-77367475 (+)
A/J	ENSMUSG00195005163	pseudogene	Chr18:77356705-77356950 (+)
AKR/J	ENSMUSG00220017924	pseudogene	Chr18:77298273-77298518 (+)
AKR/J	ENSMUSG00220018262	pseudogene	Chr18:77308798-77309043 (+)
BALB/cJ	ENSMUSG00180014114	pseudogene	Chr18:77940739-77940984 (+)
BALB/cJ	ENSMUSG00180014088	pseudogene	Chr18:77930584-77930829 (+)
C3H/HeJ	ENSMUSG00175012651	pseudogene	Chr18:77476602-77476847 (+)
C57BL/6NJ	ENSMUSG00215032054	pseudogene	Chr18:76838827-76839072 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030452	pseudogene	Chr18:76380492-76380737 (+)
CAST/EiJ	ENSTCUG00005030476	pseudogene	Chr18:76396795-76397040 (+)
CAST/EiJ	ENSTCUG00005028573	pseudogene	Chr18:76383757-76384002 (+)
CBA/J	ENSMUSG00210036849	pseudogene	Chr18:77427180-77427425 (+)
DBA/2J	ENSMUSG00185011579	pseudogene	Chr18:77332423-77332668 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000037721	pseudogene	Chr18:77240765-77241010 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190024103	pseudogene	Chr18:77132696-77132941 (+)
NOD/ShiLtJ	ENSMUSG00190025496	pseudogene	Chr18:77142851-77143096 (+)
NZO/HlLtJ	ENSMUSG00225034590	pseudogene	Chr18:79256726-79256971 (+)
NZO/HlLtJ	ENSMUSG00225035261	pseudogene	Chr18:79266170-79266415 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010009351	pseudogene	Chr18:77982058-77982303 (+)
WSB/EiJ	ENSIUOG00005008351	pseudogene	Chr18:76812727-76812972 (+)

Homology

• Gene Tree
  Gm36627
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm36627
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000118357 (Evidence)
• NCBI Gene
  102640601

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118357	Ensembl Gene Model | MGI Sequence Detail	246	C57BL/6J
transcript	ENSMUST00000237241	Ensembl | MGI Sequence Detail	246	Not Applicable
polypeptide	XP_036017245	RefSeq | MGI Sequence Detail	81	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;