Gm36595 Gene Detail

Summary

• Symbol
  Gm36595
• Name
  predicted gene, 36595

• Feature Type
  lncRNA gene
• IDs
  MGI:5595754
  NCBI Gene: 102640560
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:56308077-56352063 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595754	lncRNA gene	Chr10:56301383-56352063 (+)
129S1/SvImJ	ENSMUSG00200029432	lncRNA gene	Chr10:53220880-53264928 (+)
A/J	ENSMUSG00195028695	lncRNA gene	Chr10:53474710-53518764 (+)
AKR/J	ENSMUSG00220043187	lncRNA gene	Chr10:53186538-53230567 (+)
BALB/cJ	ENSMUSG00180029303	lncRNA gene	Chr10:53604139-53648184 (+)
C3H/HeJ	ENSMUSG00175026988	lncRNA gene	Chr10:53440529-53484579 (+)
C57BL/6NJ	ENSMUSG00215032395	lncRNA gene	Chr10:53126622-53170669 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030374	lncRNA gene	Chr10:53275016-53319217 (+)
CBA/J	ENSMUSG00210038777	lncRNA gene	Chr10:53252646-53296698 (+)
DBA/2J	ENSMUSG00185043616	lncRNA gene	Chr10:53404533-53448579 (+)
FVB/NJ	ENSMUSG00205037557	lncRNA gene	Chr10:53316043-53360085 (+)
JF1/MsJ	ENSUMUG00000023803	lncRNA gene	Chr10:53026292-53070385 (+)
LP/J	ENSMUSG00230023988	lncRNA gene	Chr10:55205716-55249758 (+)
NOD/ShiLtJ	ENSMUSG00190040216	lncRNA gene	Chr10:53586269-53630320 (+)
NZO/HlLtJ	ENSMUSG00225022825	lncRNA gene	Chr10:59487610-59531544 (+)
PWK/PhJ	ENSLUMG00010024531	lncRNA gene	Chr10:53243226-53287187 (+)
SPRET/EiJ	ENSMSPG00010027715	lncRNA gene	Chr10:54795101-54840037 (+)
WSB/EiJ	ENSIUOG00005043399	lncRNA gene	Chr10:53229554-53274680 (+)

Homology

• Gene Tree
  Gm36595
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm36595
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000112833 (Evidence)
• NCBI Gene
  102640560

Representative Sequences			Length	Strain/Species
genomic	102640560	NCBI Gene Model | MGI Sequence Detail	43987	C57BL/6J
transcript	NR_152768	RefSeq | MGI Sequence Detail	2006	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9