Gm36582 Gene Detail

Summary

• Symbol
  Gm36582
• Name
  predicted gene, 36582
• Synonyms
  Gm44275

• Feature Type
  lncRNA gene
• IDs
  MGI:5595741
  NCBI Gene: 102640545
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:135289153-135296559 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  391 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595741	lncRNA gene	Chr6:135289153-135296559 (-)
129S1/SvImJ	ENSMUSG00200034320	lncRNA gene	Chr6:132782568-132789953 (-)
A/J	ENSMUSG00195032518	lncRNA gene	Chr6:131635565-131643075 (-)
AKR/J	ENSMUSG00220042862	lncRNA gene	Chr6:129860007-129867531 (-)
BALB/cJ	ENSMUSG00180039127	lncRNA gene	Chr6:131715337-131722678 (-)
C3H/HeJ	ENSMUSG00175036307	lncRNA gene	Chr6:131655888-131663392 (-)
C57BL/6NJ	ENSMUSG00215033920	lncRNA gene	Chr6:131912087-131919493 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006444	lincRNA gene	Chr6:133295891-133303391 (-)
CAST/EiJ	ENSTCUG00005041194	lncRNA gene	Chr6:132575181-132582763 (-)
CBA/J	ENSMUSG00210016689	lncRNA gene	Chr6:131674311-131681824 (-)
DBA/2J	ENSMUSG00185022853	lncRNA gene	Chr6:132370537-132378049 (-)
FVB/NJ	ENSMUSG00205043584	lncRNA gene	Chr6:130809692-130817055 (-)
JF1/MsJ	ENSUMUG00000045405	lncRNA gene	Chr6:131128443-131135850 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190006795	lncRNA gene	Chr6:132208762-132216274 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043135	lncRNA gene	Chr6:130176750-130184157 (-)
SPRET/EiJ	ENSMSPG00010035807	lncRNA gene	Chr6:133973622-133981486 (-)
WSB/EiJ	ENSIUOG00005045777	lncRNA gene	Chr6:132477828-132485145 (-)

Homology

• Gene Tree
  Gm36582
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107768 (Evidence)
• NCBI Gene
  102640545

Representative Sequences			Length	Strain/Species
genomic	102640545	NCBI Gene Model | MGI Sequence Detail	7407	C57BL/6J
transcript	NR_157238	RefSeq | MGI Sequence Detail	2519	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5690667

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36582:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63762	Chr6:135296553-135296565 (-)	0 bp