Gm36560 Gene Detail

Summary

• Symbol
  Gm36560
• Name
  predicted gene, 36560

• Feature Type
  lncRNA gene
• IDs
  MGI:5595719
  NCBI Gene: 102640519
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:102705832-102774660 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1465 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595719	lncRNA gene	Chr15:102652600-102774660 (+)
129S1/SvImJ	ENSMUSG00200052957	lncRNA gene	Chr15:99930883-99952932 (+)
A/J	ENSMUSG00195047836	lncRNA gene	Chr15:99820046-99842094 (+)
AKR/J	ENSMUSG00220050556	lncRNA gene	Chr15:99789685-99811664 (+)
BALB/cJ	ENSMUSG00180047297	lncRNA gene	Chr15:99703537-99725582 (+)
C3H/HeJ	ENSMUSG00175047767	lncRNA gene	Chr15:100027196-100049244 (+)
C57BL/6NJ	ENSMUSG00215051639	lncRNA gene	Chr15:99746955-99769005 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047831	lncRNA gene	Chr15:99220193-99242318 (+)
CBA/J	ENSMUSG00210031857	lncRNA gene	Chr15:99773047-99795090 (+)
DBA/2J	ENSMUSG00185042043	lncRNA gene	Chr15:99789493-99811518 (+)
FVB/NJ	ENSMUSG00205048956	lncRNA gene	Chr15:99494263-99516290 (+)
JF1/MsJ	ENSUMUG00000057125	lncRNA gene	Chr15:99248467-99270562 (+)
LP/J	ENSMUSG00230006801	lncRNA gene	Chr15:103151883-103173930 (+)
NOD/ShiLtJ	ENSMUSG00190049109	lncRNA gene	Chr15:99734332-99756357 (+)
NZO/HlLtJ	ENSMUSG00225028252	lncRNA gene	Chr15:103331213-103353221 (+)
PWK/PhJ	ENSLUMG00010049546	lncRNA gene	Chr15:99459294-99481416 (+)
SPRET/EiJ	ENSMSPG00010050800	lncRNA gene	Chr15:101244138-101266318 (+)
WSB/EiJ	ENSIUOG00005040940	lncRNA gene	Chr15:99873741-99895741 (+)

Homology

• Gene Tree
  Gm36560
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  16

• Ensembl
  ENSMUSG00000116500 (Evidence)
• NCBI Gene
  102640519

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116500	Ensembl Gene Model | MGI Sequence Detail	68829	C57BL/6J
transcript	ENSMUST00000287929	Ensembl | MGI Sequence Detail	694	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14