Gm36550 Gene Detail

Summary

• Symbol
  Gm36550
• Name
  predicted gene, 36550

• Feature Type
  lncRNA gene
• IDs
  MGI:5595709
  NCBI Gene: 108168081
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:48747204-48749493 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595709	lncRNA gene	Chr13:48746956-48750057 (+)
129S1/SvImJ	ENSMUSG00200036752	lncRNA gene	Chr13:46025392-46027734 (+)
A/J	ENSMUSG00195029635	lncRNA gene	Chr13:45074959-45077301 (+)
AKR/J	ENSMUSG00220009667	lncRNA gene	Chr13:44885783-44888125 (+)
BALB/cJ	ENSMUSG00180009056	lncRNA gene	Chr13:45377263-45379605 (+)
C3H/HeJ	ENSMUSG00175031942	lncRNA gene	Chr13:45347725-45350067 (+)
C57BL/6NJ	ENSMUSG00215007189	lncRNA gene	Chr13:45494284-45496626 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033729	lncRNA gene	Chr13:45405250-45407612 (+)
CBA/J	ENSMUSG00210028198	lncRNA gene	Chr13:45353092-45355434 (+)
DBA/2J	ENSMUSG00185033696	lncRNA gene	Chr13:46167122-46169464 (+)
FVB/NJ	ENSMUSG00205013750	lncRNA gene	Chr13:45130021-45132363 (+)
JF1/MsJ	ENSUMUG00000017382	lncRNA gene	Chr13:45694727-45697066 (+)
LP/J	ENSMUSG00230030442	lncRNA gene	Chr13:55487953-55490295 (+)
NOD/ShiLtJ	ENSMUSG00190012490	lncRNA gene	Chr13:45571998-45574340 (+)
NZO/HlLtJ	ENSMUSG00225036298	lncRNA gene	Chr13:49238349-49240691 (+)
PWK/PhJ	ENSLUMG00010020980	lncRNA gene	Chr13:44551060-44553402 (+)
SPRET/EiJ	ENSMSPG00010030991	lncRNA gene	Chr13:44677553-44679906 (+)
WSB/EiJ	ENSIUOG00005028296	lncRNA gene	Chr13:44709038-44711380 (+)

Homology

• Gene Tree
  Gm36550
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm36550
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113037 (Evidence)
• NCBI Gene
  108168081

Representative Sequences			Length	Strain/Species
genomic	108168081	NCBI Gene Model | MGI Sequence Detail	2290	C57BL/6J
transcript	XR_001780934	RefSeq | MGI Sequence Detail	761	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69