Gm36546 Gene Detail

Summary

• Symbol
  Gm36546
• Name
  predicted gene, 36546
• Synonyms
  Gm44819

• Feature Type
  lncRNA gene
• IDs
  MGI:5595705
  NCBI Gene: 118567526
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:43320265-43320738 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595705	lncRNA gene	Chr7:43318687-43321318 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007169	lincRNA gene	Chr7:43699031-43699504 (-)
A/J	MGP_AJ_G0007165	lincRNA gene	Chr7:42799227-42799700 (-)
AKR/J	MGP_AKRJ_G0007135	lincRNA gene	Chr7:44178547-44179020 (-)
BALB/cJ	MGP_BALBcJ_G0007144	lincRNA gene	Chr7:42915708-42916181 (-)
C3H/HeJ	MGP_C3HHeJ_G0007087	lincRNA gene	Chr7:44680734-44681207 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007312	lincRNA gene	Chr7:45899311-45899784 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006525	lincRNA gene	Chr7:44930032-44930504 (-)
CAST/EiJ	MGP_CASTEiJ_G0006991	lincRNA gene	Chr7:35862865-35863338 (-)
CBA/J	MGP_CBAJ_G0007070	lincRNA gene	Chr7:47354927-47355400 (-)
DBA/2J	MGP_DBA2J_G0007091	lincRNA gene	Chr7:42606007-42606480 (-)
FVB/NJ	MGP_FVBNJ_G0007114	lincRNA gene	Chr7:42317888-42318361 (-)
LP/J	MGP_LPJ_G0007173	lincRNA gene	Chr7:44432787-44433260 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007092	lincRNA gene	Chr7:46287669-46288142 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007316	lincRNA gene	Chr7:43306521-43306994 (-)
PWK/PhJ	MGP_PWKPhJ_G0006846	lincRNA gene	Chr6:130796691-130797164 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0007051	lincRNA gene	Chr7:43848792-43849265 (-)

Homology

• Gene Tree
  Gm36546
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000108783 (Evidence)
• NCBI Gene
  118567526

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108783	Ensembl Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	ENSMUST00000206372	Ensembl | MGI Sequence Detail	230	Not Applicable

Other
Accession IDs

MGI:5753395

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm36546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72171	Chr7:43321669-43321676 (-)	-935 bp